Package: ugene
Version: 50.0+dfsg-1
Severity: important
Tags: l10n
X-Debbugs-Cc: i...@kalankaboom.net
Dear Maintainer,
* What led up to the situation?
I installed package `ugene`.
* What exactly did you do (or not do) that was effective (or
ineffective)?
Running `ugeneui` and checking the installed plugins menu.
* What was the outcome of this action?
No plugins were listed in the plugin manager.
* What outcome did you expect instead?
That the installed plugins would be listed.
After some research, I found that Ugene requires that its `plugins`
directory be in the same directory as its executables (`ugene`, `ugeneui`,
etc.). I can see that the plugins are installed in `/lib/ugene/plugins`, so the
issue is just that `ugene` cannot find them. This issue seems similar to
[this one on GitHub](https://github.com/ugeneunipro/ugene/issues/293).
Could a symlink maybe be useful in this case?
Thank you very much for your help!
-- System Information:
Debian Release: trixie/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: amd64 (x86_64)
Foreign Architectures: i386
Kernel: Linux 6.7.12-amd64 (SMP w/20 CPU threads; PREEMPT)
Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8),
LANGUAGE=en_GB:en
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
Versions of packages ugene depends on:
ii libc6 2.38-11
ii libgcc-s1 14-20240330-1
ii libgl1 1.7.0-1+b1
ii libglu1-mesa [libglu1] 9.0.2-1.1+b1
ii libqt5core5t64 5.15.10+dfsg-7.2+b1
ii libqt5gui5t64 5.15.10+dfsg-7.2+b1
ii libqt5network5t64 5.15.10+dfsg-7.2+b1
ii libqt5printsupport5t64 5.15.10+dfsg-7.2+b1
ii libqt5script5 5.15.10+dfsg-3+b1
ii libqt5scripttools5 5.15.10+dfsg-3+b1
ii libqt5svg5 5.15.10-2+b2
ii libqt5test5t64 5.15.10+dfsg-7.2+b1
ii libqt5widgets5t64 5.15.10+dfsg-7.2+b1
ii libqt5xml5t64 5.15.10+dfsg-7.2+b1
ii libsqlite3-0 3.45.3-1
ii libstdc++6 14-20240330-1
ii libx11-6 2:1.8.7-1+b1
ii libxtst6 2:1.2.3-1.1+b1
ii ugene-data 50.0+dfsg-1
ii zlib1g 1:1.3.dfsg-3.1
Versions of packages ugene recommends:
ii bedtools 2.31.1+dfsg-2
ii bowtie 1.3.1-3
ii bowtie2 2.5.3-1
ii bwa 0.7.17-7+b3
pn clark <none>
ii clustalo 1.2.4-8
ii clustalw 2.1+lgpl-7
ii cutadapt 4.7-2
ii default-jre-headless 2:1.17-75
ii fastqc 0.12.1+dfsg-3
ii hisat2 2.2.1-4+b3
ii hmmer 3.4+dfsg-2
ii hmmer2 2.3.2+dfsg-12
ii kalign 1:3.4.0-1
ii kraken 1.1.1-4
ii macs 3.0.1-2
ii mafft 7.505-1
ii metaphlan [metaphlan2] 4.0.4-1
ii mrbayes 3.2.7a-7+b1
ii muscle 1:5.1.0-1
ii ncbi-blast+ 2.12.0+ds-4+b1
ii phyml 3:3.3.20220408-3+b1
ii primer3 2.6.1-4
ii r-base 4.4.0-2
ii samtools 1.19.2-1+b1
ii spades 3.15.5+dfsg-7
ii t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1
ii trimmomatic 0.39+dfsg-2
ii vcftools 0.1.16-3+b1
pn wevote <none>
Versions of packages ugene suggests:
pn cufflinks <none>
-- no debconf information
