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Maintainer: pyt...@freebsd.org Log URL: https://pkg-status.freebsd.org/ampere2/data/main-armv7-default/pb78025a96ed9_s3c1be0b261/logs/py39-scipy-1.11.1_2.log Build URL: https://pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=pb78025a96ed9_s3c1be0b261 Log: =>> Building science/py-scipy build started at Wed May 8 02:40:14 UTC 2024 port directory: /usr/ports/science/py-scipy package name: py39-scipy-1.11.1_2 building for: FreeBSD main-armv7-default-job-13 15.0-CURRENT FreeBSD 15.0-CURRENT 1500018 arm maintained by: pyt...@freebsd.org Makefile datestamp: -rw-r--r-- 1 root wheel 2054 Jan 6 01:02 /usr/ports/science/py-scipy/Makefile Ports top last git commit: b78025a96ed Ports top unclean checkout: no Port dir last git commit: f2489ab0c72 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.1-30-g79e3edcd Host OSVERSION: 1500018 Jail OSVERSION: 1500018 Job Id: 13 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1500018 UNAME_v=FreeBSD 15.0-CURRENT 1500018 UNAME_r=15.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.1-30-g79e3edcd MASTERMNT=/usr/local/poudriere/data/.m/main-armv7-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/main-armv7-default/13/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=main-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/main-armv7-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.1-30-g79e3edcd SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for py39-scipy-1.11.1_2: DOCS=on: Build and/or install documentation ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- pyt...@freebsd.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scipy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran13" F90="gfortran13" FC="gfortran13" FFLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc13" F90FLAGS="-O -std=legacy -Wl,-rpath=/usr/local/lib/gcc13" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc13" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39/.cache HOME=/wrkdirs/usr/ports/science/py-scipy/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/py-scipy/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/py-scipy/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/l ocal/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -shared -Wl,-rpath=/usr/local/lib/gcc13 -L/usr/local/lib/gcc13 -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=15.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/py39-scipy" EXAMPLESDIR="share/examples/py39-scipy" DATADIR="share/py39-scipy" WWWDIR="www/py39-scipy" ETCDIR="etc/py39-scipy" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=freebsd15 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-scipy DOCSDIR=/usr/local/share/doc/py39-scipy EXAMPLESDIR=/usr/local/share/examples/py39-scipy WWWDIR=/usr/local/www/py39-scipy ETCDIR=/usr/local/etc/py39-scipy --End SUB_LIST-- ---Begin make.conf--- # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-scipy-1.11.1_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.21.2.pkg [main-armv7-default-job-13] Installing pkg-1.21.2... [main-armv7-default-job-13] Extracting pkg-1.21.2: .......... done ===> py39-scipy-1.11.1_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-scipy-1.11.1_2 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-scipy-1.11.1_2 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-scipy-1.11.1_2 for building => SHA256 Checksum OK for scipy-1.11.1.tar.gz. => SHA256 Checksum OK for scipy-html-1.11.1.zip. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-scipy-1.11.1_2 for building ===> Extracting for py39-scipy-1.11.1_2 => SHA256 Checksum OK for scipy-1.11.1.tar.gz. => SHA256 Checksum OK for scipy-html-1.11.1.zip. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for py39-scipy-1.11.1_2 ===> Applying FreeBSD patches for py39-scipy-1.11.1_2 from /usr/ports/science/py-scipy/files =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-scipy-1.11.1_2 depends on package: py39-numpy>=1.16,1<1.26,1 - not found ===> Installing existing package /packages/All/py39-numpy-1.25.0_7,1.pkg [main-armv7-default-job-13] Installing py39-numpy-1.25.0_7,1... [main-armv7-default-job-13] `-- Installing gcc13-13.2.0_4... [main-armv7-default-job-13] | `-- Installing binutils-2.40_5,1... [main-armv7-default-job-13] | | `-- Installing gettext-runtime-0.22.5... [main-armv7-default-job-13] | | `-- Installing indexinfo-0.3.1... [main-armv7-default-job-13] | | `-- Extracting indexinfo-0.3.1: .... done [main-armv7-default-job-13] | | `-- Extracting gettext-runtime-0.22.5: .......... done [main-armv7-default-job-13] | | `-- Installing zstd-1.5.6... [main-armv7-default-job-13] | | `-- Installing liblz4-1.9.4_1,1... [main-armv7-default-job-13] | | `-- Extracting liblz4-1.9.4_1,1: .......... done [main-armv7-default-job-13] | | `-- Extracting zstd-1.5.6: .......... done [main-armv7-default-job-13] | `-- Extracting binutils-2.40_5,1: .......... done [main-armv7-default-job-13] | `-- Installing gmp-6.3.0... [main-armv7-default-job-13] | `-- Extracting gmp-6.3.0: .......... done [main-armv7-default-job-13] | `-- Installing mpc-1.3.1_1... [main-armv7-default-job-13] | | `-- Installing mpfr-4.2.1,1... [main-armv7-default-job-13] | | `-- Extracting mpfr-4.2.1,1: .......... done [main-armv7-default-job-13] | `-- Extracting mpc-1.3.1_1: ......... done [main-armv7-default-job-13] `-- Extracting gcc13-13.2.0_4: .......... done [main-armv7-default-job-13] `-- Installing openblas-0.3.25,2... [main-armv7-default-job-13] `-- Extracting openblas-0.3.25,2: .......... done [main-armv7-default-job-13] `-- Installing py39-setuptools-63.1.0_1... [main-armv7-default-job-13] | `-- Installing python39-3.9.18_2... [main-armv7-default-job-13] | | `-- Installing libffi-3.4.4_1... [main-armv7-default-job-13] | | `-- Extracting libffi-3.4.4_1: .......... done [main-armv7-default-job-13] | | `-- Installing mpdecimal-4.0.0... [main-armv7-default-job-13] | | `-- Extracting mpdecimal-4.0.0: .......... done [main-armv7-default-job-13] | | `-- Installing readline-8.2.10... [main-armv7-default-job-13] | | `-- Extracting readline-8.2.10: .......... done [main-armv7-default-job-13] | `-- Extracting python39-3.9.18_2: .......... done [main-armv7-default-job-13] `-- Extracting py39-setuptools-63.1.0_1: .......... done [main-armv7-default-job-13] `-- Installing suitesparse-umfpack-6.3.3... [main-armv7-default-job-13] | `-- Installing suitesparse-amd-3.3.2... [main-armv7-default-job-13] | | `-- Installing suitesparse-config-7.7.0... [main-armv7-default-job-13] | | `-- Extracting suitesparse-config-7.7.0: .......... done [main-armv7-default-job-13] | `-- Extracting suitesparse-amd-3.3.2: .......... done [main-armv7-default-job-13] | `-- Installing suitesparse-camd-3.3.2... [main-armv7-default-job-13] | `-- Extracting suitesparse-camd-3.3.2: .......... done [main-armv7-default-job-13] | `-- Installing suitesparse-ccolamd-3.3.3... [main-armv7-default-job-13] | `-- Extracting suitesparse-ccolamd-3.3.3: .......... done [main-armv7-default-job-13] | `-- Installing suitesparse-cholmod-5.2.1... [main-armv7-default-job-13] | | `-- Installing suitesparse-colamd-3.3.3... [main-armv7-default-job-13] | | `-- Extracting suitesparse-colamd-3.3.3: .......... done [main-armv7-default-job-13] | `-- Extracting suitesparse-cholmod-5.2.1: .......... done [main-armv7-default-job-13] `-- Extracting suitesparse-umfpack-6.3.3: .......... done [main-armv7-default-job-13] Extracting py39-numpy-1.25.0_7,1: .......... done ===== Message from gcc13-13.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc13 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from python39-3.9.18_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 ===> py39-scipy-1.11.1_2 depends on package: py39-numpy>=1.16,1<1.26,1 - found ===> Returning to build of py39-scipy-1.11.1_2 ===> py39-scipy-1.11.1_2 depends on package: py39-pip>0 - not found ===> Installing existing package /packages/All/py39-pip-23.3.2_1.pkg [main-armv7-default-job-13] Installing py39-pip-23.3.2_1... [main-armv7-default-job-13] Extracting py39-pip-23.3.2_1: .......... done ===== Message from py39-pip-23.3.2_1: -- pip MUST ONLY be used: * With the --user flag, OR * To install or manage Python packages in virtual environments Failure to follow this warning can and will result in an inconsistent system-wide Python environment (LOCALBASE/lib/pythonX.Y/site-packages) and cause errors. Avoid using pip as root unless you know what you're doing. ===> py39-scipy-1.11.1_2 depends on package: py39-pip>0 - found ===> Returning to build of py39-scipy-1.11.1_2 ===> py39-scipy-1.11.1_2 depends on package: py39-pybind11>0 - not found ===> Installing existing package /packages/All/py39-pybind11-2.12.0.pkg [main-armv7-default-job-13] Installing py39-pybind11-2.12.0... [main-armv7-default-job-13] Extracting py39-pybind11-2.12.0: .......... done ===> py39-scipy-1.11.1_2 depends on package: py39-pybind11>0 - found ===> Returning to build of py39-scipy-1.11.1_2 ===> py39-scipy-1.11.1_2 depends on package: py39-pythran>=0 - not found ===> Installing existing package /packages/All/py39-pythran-0.15.0.pkg [main-armv7-default-job-13] Installing py39-pythran-0.15.0... [main-armv7-default-job-13] `-- Installing py39-beniget-0.4.1_1... [main-armv7-default-job-13] | `-- Installing py39-gast-0.5.4_1... [main-armv7-default-job-13] | `-- Extracting py39-gast-0.5.4_1: .......... done [main-armv7-default-job-13] `-- Extracting py39-beniget-0.4.1_1: .......... done [main-armv7-default-job-13] `-- Installing py39-ply-3.11... [main-armv7-default-job-13] `-- Extracting py39-ply-3.11: .......... done [main-armv7-default-job-13] Extracting py39-pythran-0.15.0: .......... done ===> py39-scipy-1.11.1_2 depends on package: py39-pythran>=0 - found ===> Returning to build of py39-scipy-1.11.1_2 ===> py39-scipy-1.11.1_2 depends on package: unzip>0 - not found ===> Installing existing package /packages/All/unzip-6.0_8.pkg [main-armv7-default-job-13] Installing unzip-6.0_8... [main-armv7-default-job-13] Extracting unzip-6.0_8: .......... done ===> py39-scipy-1.11.1_2 depends on package: unzip>0 - found ===> Returning to build of py39-scipy-1.11.1_2 ===> py39-scipy-1.11.1_2 depends on executable: gfortran13 - found ===> py39-scipy-1.11.1_2 depends on executable: cython-3.9 - not found ===> Installing existing package /packages/All/py39-cython-0.29.37.pkg [main-armv7-default-job-13] Installing py39-cython-0.29.37... [main-armv7-default-job-13] Extracting py39-cython-0.29.37: .......... done ===> py39-scipy-1.11.1_2 depends on executable: cython-3.9 - found ===> Returning to build of py39-scipy-1.11.1_2 ===> py39-scipy-1.11.1_2 depends on package: py39-setuptools>=63.1.0 - found ===> py39-scipy-1.11.1_2 depends on file: /usr/local/bin/python3.9 - found ===> py39-scipy-1.11.1_2 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> py39-scipy-1.11.1_2 depends on shared library: libblas.so - not found ===> Installing existing package /packages/All/blas-3.12.0_1.pkg [main-armv7-default-job-13] Installing blas-3.12.0_1... [main-armv7-default-job-13] Extracting blas-3.12.0_1: ........ done ===> py39-scipy-1.11.1_2 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Returning to build of py39-scipy-1.11.1_2 ===> py39-scipy-1.11.1_2 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for py39-scipy-1.11.1_2 setup.py:390: UserWarning: Unrecognized setuptools command ('config --fcompiler=gnu95'), proceeding with generating Cython sources and expanding templates warnings.warn("Unrecognized setuptools command ('{}'), proceeding with " =>> Killing runaway build after 7200 seconds with no output
