Hi all, After lots of tries we decided to follow your second suggestion. How can we stop the support for 32-bit windows?
Cheers, Sokratis On 22 March 2018 at 15:14, Hervé Pagès <hpa...@fredhutch.org> wrote: > Hi Sokratis, > > On 03/22/2018 06:13 AM, Sokratis Kariotis wrote: > >> Hey all, >> >> I have been updating my pathprint and pathprintGeoData packages (in 3.7) >> and I encountered the following error in one of them (only on windows >> server): >> >> Error: cannot allocate vector of size 237.3 Mb >> >> Here is the report: https://urldefense.proofpoint. >> com/v2/url?u=https-3A__bioconductor.org_checkResults_3.7_ >> bioc-2DLATEST_&d=DwICAg&c=eRAMFD45gAfqt84VtBcfhQ&r=BK7q3XeAv >> imeWdGbWY_wJYbW0WYiZvSXAJJKaaPhzWA&m=vq6ajmYLDu1OVYL9MQ4KO2q >> mc3ypMSQdmMTd3m4ygxY&s=kFbj_KW3LgfOmlyR4Pi4-ewT1wzqjOKnhdVUOB7u9xE&e= >> pathprint/tokay2-checksrc.html >> >> How can I fix this? Thanks in advance. >> > > Note that this error happens only when running the examples in 32-bit > mode (arch i386) but not in 64-bit mode (arch x64). 32-bit Windows > doesn't allow a process to use more than 2 Gb of RAM. There is no such > limit with 64-bit Windows. > > You have 2 options: (1) reduce the memory footprint of the examples, > or (2) give up on supporting your package for 32-bit Windows users. > > (2) should be the last resort. > > Cheers, > H. > > > >> Cheers, >> Sokratis >> >> >> On 21 February 2018 at 20:37, Obenchain, Valerie < >> valerie.obench...@roswellpark.org> wrote: >> >> Hi Sokratis, >>> >>> Unfortunately you can't rename a package ... and there is no such thing >>> as >>> a 'sub package'. Maybe you meant sub-package terms of dependencies. If >>> you >>> have new data to add that's independent of what's in pathprintGEOData you >>> can create a new data package. >>> >>> I'm not sure what you mean by 'considerably more data'. The >>> pathprintGEOData package is currently 22MG: >>> >>> ~ >du -h pathprintGEOData_1.4.0.tar.gz >>> 22M pathprintGEOData_1.4.0.tar.gz >>> >>> We don't support git LFS yet in the experimental data repo. If you plan >>> on >>> making the package(s) very large we should consider making a >>> ExperimentHub >>> package where the data can be stored in S3. >>> >>> Valerie >>> >>> >>> >>> On 02/21/2018 05:16 AM, Sokratis Kariotis wrote: >>> >>> Hey all, I am updating 2 of my packages (pathprint & pathprintGEOData) >>> with >>> considerably more data and a few code updates. I also want to change the >>> name of the data package to reflect the new content. Can the package name >>> be changed or do I have to create new sub-packages? Thanks in advance. >>> >>> Cheers >>> >>> >>> >>> This email message may contain legally privileged and/or confidential >>> information. If you are not the intended recipient(s), or the employee or >>> agent responsible for the delivery of this message to the intended >>> recipient(s), you are hereby notified that any disclosure, copying, >>> distribution, or use of this email message is prohibited. If you have >>> received this message in error, please notify the sender immediately by >>> e-mail and delete this email message from your computer. Thank you. >>> >> >> >> >> >> > -- > Hervé Pagès > > Program in Computational Biology > Division of Public Health Sciences > Fred Hutchinson Cancer Research Center > 1100 Fairview Ave. N, M1-B514 > P.O. Box 19024 > Seattle, WA 98109-1024 > > E-mail: hpa...@fredhutch.org > Phone: (206) 667-5791 > Fax: (206) 667-1319 > -- Sokratis Kariotis Scientific Programmer Hidelab Sheffield Institute for Translational Neuroscience 385a Glossop Rd, Sheffield, S10 2HQ [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel