Dear all,
yesterday I reported on GitHub that the regression tests of KEGGREST
fail because the KEGGREST:::.get.tmp.url function can not parse
www.kegg.jp pages anymore.
https://github.com/Bioconductor/KEGGREST/issues/21
This is a problem in Debian because 1) we do not allow the Bioconductor
packages that we redistribute to fail their tests and 2) the
reverse-dependency chain of KEGGREST is heavy.
KEGGREST <- AnnotationDbi <- GenomicFeatures <- lots of other packages
I am not familiar with KEGG enough to grasp what KEGGREST:::.get.tmp.url
was looking for. But I was wondering if this bug would be a low-hanging
fruit for somebody else in this list?
Have a nice day,
Charles Plessy
--
Charles Plessy - - ~ ~ ~ ~ ~ ~~~~ ~ ~ ~ ~ ~ - - charles.ple...@oist.jp
Okinawa Institute of Science and Technology Graduate University
Senior staff scientist ~~ Luscombe Unit ~~ https://groups.oist.jp/grsu
Toots from work - ~~ ~~~~ ~~ - https://fediscience.org/@charles_plessy
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