Hi Pedro, Tilo has responded and is currently updating the DNABarcode package.
Best, Wenjie ________________________________________ From: Pedro Sánchez Sánchez <bio.pedro.technol...@gmail.com> Sent: Wednesday, March 20, 2024 1:58 PM To: Kern, Lori Cc: Sun Wenjie; bioc-devel@r-project.org Subject: Re: [Bioc-devel] about deprecate package DNABarcode WARNING: This email originated from outside of Institut Curie. Please validate the sender's email address before clicking on links or attachments as they may not be safe. Hi all, I also tried to contact the author on the available email contacts (waiting for response from tilo.buschmann...@gmail.com<mailto:tilo.buschmann...@gmail.com>; depreciated email tilo.buschm...@izi.fraunhofer.de<mailto:tilo.buschm...@izi.fraunhofer.de>) I found on the internet. If I get a response, I'll let you know. It will be a pity if DNABarcodes is depreciated for lacking of maintenance. Just in case, it is helpful for someone, I just want to mention there is an apparently similar repository on GitHub with the same goal as DNABarcodes, by other developers and written in Python/Jupyter Notebooks: https://github.com/feldman4/dna-barcodes. Best, Pedro El mar, 12 mar 2024 a las 13:18, Kern, Lori via Bioc-devel (<bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>>) escribió: The package is deprecated in devel. It will remain listed in the next Bioc 3.19 release, but deprecated, and removed from anticipated 3.20. The package will have up until the fall release (generally late Oct / early Nov) to reinstate before it will be removed. Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org<mailto:bioc-devel-boun...@r-project.org>> on behalf of Sun Wenjie <wenjie....@curie.fr<mailto:wenjie....@curie.fr>> Sent: Tuesday, March 12, 2024 8:07 AM To: bioc-devel@r-project.org<mailto:bioc-devel@r-project.org> <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>> Subject: [Bioc-devel] about deprecate package DNABarcode Hi Bioconductor core team, I saw the package of DNABarcode is listed as to be deprecated. I am trying to reach the author. Do you know when will be the deadline? Best, Wenjie ------------------------------------------ Wenjie SUN Postdoctoral researcher UMR168, Curie Institute E-mail: wenjie....@curie.fr<mailto:wenjie....@curie.fr> Address: batiment Curie, RDC.13A 11 rue Pierre et Marie Curie, 75005 Paris https://secure-web.cisco.com/1-TBJw4o6EGDXK_14o3XCIp7DQhMLTaxvVR4NCL9q9sGYrycpujC_OYkx7ortrnjf5crYpYXyRsFEcpldkHYYLTfw-V9oZUKv8flhupsI5LV_JzcWwDb1FnvBDTYwcj0cXxmA3GNJQVF3Mnc1QnR55FA-_sO9AKIMHbDHD2U1y9HvFChc3nLydpoM4IZQhFrkC01Z7BtNAdt0gmfJzyF8AM4qlM40FR8g5KAPURr03QM4ukAWrszSyzsi9jEVmrUnL0Tjcsf1thPL1wOBupAU-UZtzsKkLIae_8gglI6k6W8kBMlUjp2SvfS4iEIah835/https%3A%2F%2Fcurie.fr%2Fequipe%2Fperie _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://secure-web.cisco.com/1l6kli-5ER6TfFRoWON7eg605W9-aPQ1auinsEup1uN5OFQqRFc_QRRlrkmssHncngEABAwXz4PYezr9ontykNdw3OQlPlaKaQJXx9J_ey5JecbnynELh3K-b_GgnpbL94Du22Rl80OCRrkiU3mGuPhIqnUgFxA9Bo9QsZmZHs3u4yuLvZK9QVQxgvloJXJO8Z0H8rBvABpOzApweEY8hv8ovHZBVkWCCPX1r-yGlLt9G_Y1GJvdqruefoEmWpUBxngKD3odX73chnPmSKwS0X31BlZezoSG7BeE5KK_SR8tKGHjf8oxPHoNBTC1WTP6x/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org<mailto:Bioc-devel@r-project.org> mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
