Hello maintainers, A little over a year ago, Bioconductor moved forward with a default branch renaming from 'master' to 'devel' on git.bioconductor.org. For an easier transition we have thus far left the deprecated 'master' branch and if you were pushing received a Warning message that this branch was deprecated and to use 'devel'. We are planning to officially defunct the use of 'master' shortly after the next Bioconductor release. If you have been delaying the transition to using 'devel' we highly encourage you to check out the original documentation provided and make the transition as soon as possible. If you have any questions or concerns, please reach out on this mailing list or the dedicated community slack channel bioc-git.
Helpful resources: 1. BiocBlog:https://blog.bioconductor.org/posts/2023-03-01-transition-to-devel/ 2. Branch Renaming FAQ:https://contributions.bioconductor.org/branch-rename-faqs.html Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Kern, Lori <lori.sheph...@roswellpark.org> Sent: Wednesday, March 8, 2023 2:29 PM To: Maria.Doyle <maria.do...@ul.ie>; bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: Re: [Bioc-devel] Bioconductor will rename the default branch on `git.bioconductor.org` to `devel` The Bioconductor Core Team has moved forward with the branch renaming from master to devel on git.bioconductor.org . Please see 1. BiocBlog: https://secure-web.cisco.com/1viP5nUaE87rXaj1htxbn_Z4JxgvhbJAIp5weR1klW-gCBkH6ZNbpVsyXkW_l2i1dUWO75VXq8QQZawqX4VKORR-vqu_495UbK75DBJrFOSe3nOeXRltHOB5nv-r0XFX80L_gL9dQ1Uddqvmo0pQvOod5c45s870PTKQtzVlvAyF2ZMVWQZQjB9dgXH3j2W5RM4MUGxHcf9au36Jdl0_LZAzAbvQPikYlnRbQCqiDyBMUVINyKUxWZieZCpPgFIM3BzgcqcDPLluoVnUM0kUWFXTagxBIqZhqla1fRaZhIhFi8tCxtMy99hx9_8w3nYV5/https%3A%2F%2Fbioconductor.github.io%2Fbiocblog%2Fposts%2F2023-03-01-transition-to-devel%2F 2. Branch Renaming FAQ: https://secure-web.cisco.com/1arsDAuTSNTYHN7RN2VpvUx_3T1AN6xSyxddAqqhoglNQBa7DB1d1OBX_GXfzMyL2BBuz4al8m2_b5vIx9xEBq3tWC5-dC_hgKvbo3YrRofZQu3WeNulmit2X6pCN01Nl1QIBzyJ3wfdgEe9zu2cxYxvjTZ0Basya6zJOagcEocKJ3z0_xWoathpHFRdE6Awp6Tx2pygv632MK4Bc4j3bNN4Jhnqqk1wfkdY2yj4RB6LSq81gJtmituiVeuy8V6CVZ_tpdcJ28EiZW1-jW-MDBSkGnO-JV4c5O5QmKcI05FcSKpniaUonXYEh-TYi7ivL/https%3A%2F%2Fcontributions.bioconductor.org%2Fbranch-rename-faqs.html Anyone having trouble can post to the community-bioc slack #bioc_git channel or on the bioc-devel@r-project.org mailing list Cheers, Lori Shepherd - Kern Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263 ________________________________ From: Bioc-devel <bioc-devel-boun...@r-project.org> on behalf of Maria.Doyle <maria.do...@ul.ie> Sent: Thursday, March 2, 2023 4:59 AM To: bioc-devel@r-project.org <bioc-devel@r-project.org> Subject: [Bioc-devel] Bioconductor will rename the default branch on `git.bioconductor.org` to `devel` On March 8th, the Bioconductor Core Team will rename the default branch on `git.bioconductor.org` to `devel`. For more details, see the 1. Blog post<https://secure-web.cisco.com/1ta96W8ZUhuu10ceOJOo87Qoj_ytrMT0LVK74QuN8DAtq4all0dy-yoq4LHmcsK-PWdiYUKLUT_m8VYssTTNNQOEABxHd_O__4Lz4TH7sbXXdhmnu17udkwugfPjk8z1t02YH9LQVbQk7ZbJuQYAngI1YJ2-Si3MV08RLA_f_5gwuoBucbsEfZzL8OisYYsp-Xo6FMFP-IfBDWSpqzKuLkV7RNYK9NT8bvnUjU3HxhHbFnI4CH0bxHEnT_N83yVbzN6-54djFcRZfO4MUBP2JxA6j8uStCyOaObZ1Q1kz76KeWHzxeQeQ07g6lS-4oktU/https%3A%2F%2Fbioconductor.github.io%2Fbiocblog%2Fposts%2F2023-03-01-transition-to-devel%2F> 2. Branch Rename FAQ<https://secure-web.cisco.com/1DKLDGic1Z_Fg2Jx5m8jI_BAR2MahlZsmxbwgD7UQpRh6KPp0KMaq7ERr25z286K30X4pxIV6xUdyOLmvnWh-0YwmaokbxQlW-GOUpm_hrJeRP3Won4SQ6DHBT4fHz0K3ignOHvJVV2D4EKwqZvQ2WseYGXqvOsShtsnxE45ZomBP2xkt_nGKaVVnZmKPoBJSiNlYfyu_qo7okozalnqABEF2suYWrUCweZgEaV6Yv2emqZt99vAijvXnXRvBK3eD1zoKew5DLI36wS02WT-DX03sdr01uGwuZinzJ3pY9JmKTEQZp74zfVQDMHF94lZn/https%3A%2F%2Fcontributions.bioconductor.org%2Fbranch-rename-faqs.html> Maria Doyle, PhD Bioconductor Community Manager School of Medicine, University of Limerick, Limerick, V94 T9PX [I work flexible hours across several time zones. I don't expect you to read or respond to my emails outside of your normal working hours] [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1F7pevGjkMogpSja-6sUwwfPrSAU8XzAuCf3wmmDyAEHbadmWSJ9hhSeDYKCo-ZfEXznzhPed-TcoodiBFDfN45y1zCMbzp9XMkXHL08lLy9o96SjNRslLGRrfPVpdOYdPiv-hI1J0MiFKyDyZLOfiftbTqnpjReT3gVSg8dTiZLp5NfcgWwoLjZJBgFRJxpS6ZbrBHm7R-qbeLNTLrIoa8xDdmyGgWFY0LKOXC5jnWOo6b2PdN0jtT-Xghx-znF46TAhi1k-bMEVYubqT-MW8rFVQ2D8JQNwIqaXb7v0lDrWWRRhyig1z7TGZ3gPdPEA/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://secure-web.cisco.com/1X8-ZTukZYXxk5SBCAYCJIhxFtvQ_o_FVAmlceb5nFT77Bz84wO2VBhsBCcxOZfYkPD4x6M-AO8qXABjXO_FUWt4-nhCtEkfInwjlLVFkGYiUuPsQgf6Tn8m9IpHluCie4x3XwJ33SCmJ6_kfMQ8k3HWkDBPnog6DhLBlesWtbSavFCs0nfiwWG6uN9DWzBNuaSdk0-7hYkAHRafC-TpaMOsBtod-FPv6xYhYMos1hV-oxdGDo5HRYjsPr6K8TJOXQxS5mFRcglpcdE4DHSHOhbN4HKUbMrUjCRLfluK8gsezlLL6tJrbKLRYPZafGAaq/https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fbioc-devel This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the employee or agent responsible for the delivery of this message to the intended recipient(s), you are hereby notified that any disclosure, copying, distribution, or use of this email message is prohibited. If you have received this message in error, please notify the sender immediately by e-mail and delete this email message from your computer. Thank you. [[alternative HTML version deleted]] _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
