Dear colleagues, dear BioC core team, One of my packages in the devel branch, the msa package seems broken since yesterday. The vignette does not run anymore (therefore, the package does not build), and the reason is that the BLOSUM62 substitution matrix cannot be loaded form the Biostrings package anymore. I checked the Biostrings package. In Version 2.70.3 in the release branch, the substitution matrices were still in the data/ directory. In the current devel version 2.71.6, they have disappeared. I found no hint to that in the NEWS file. So, I want to kindly ask the maintainers of the Biostrings package to give me some advice how to fix that on my side or, in case that this is an error in the current devel version of the Biostrings package, to have a look into this.
Thanks a lot in advance, best regards, Ulrich _______________________________________________ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel