The following commit has been merged in the master branch: commit 8ff47c28596ad659572be0f366739194dcedf096 Author: Andreas Tille <ti...@debian.org> Date: Wed Jan 17 11:38:50 2018 +0100
Re-render with in-production blends-dev diff --git a/debian-med-tasks.desc b/debian-med-tasks.desc index 40e4191..6108c40 100644 --- a/debian-med-tasks.desc +++ b/debian-med-tasks.desc @@ -1,817 +1,61 @@ +Task: debian-med +Relevance: 7 +Section: debian-med +Description: Debian Med Pure Blend + . + Task: med-bio +Parent: debian-med Section: debian-med Description: Debian Med bioinformatics packages This metapackage will install Debian packages for use in molecular biology, structural biology and other biological sciences. -Relevance: 10 -Key: +Test-new-install: mark show +Key: med-bio -Packages: list - abacas - abyss - acedb-other - acedb-other-belvu - acedb-other-dotter - adapterremoval - adun-core - aegean - aevol - alien-hunter - alter-sequence-alignment - altree - amap-align - ampliconnoise - andi - anfo - aragorn - arden - ariba - art-nextgen-simulation-tools - artemis - artfastqgenerator - atac - augustus - autodock - autodock-vina - autogrid - axe-demultiplexer - baitfisher - bamtools - barrnap - bcftools - beads - beagle - beast-mcmc - beast2-mcmc - bedops - bedtools - berkeley-express - bio-eagle - bio-rainbow - bio-tradis - blasr - bowtie - bowtie2 - boxshade - bppphyview - bppsuite - brig - bwa - cassiopee - cd-hit - cdbfasta - cgview - chimeraslayer - circlator - circos - clearcut - clonalframe - clustalo - clustalw - clustalx - codonw - concavity - conservation-code - crac - csb - cutadapt - daligner - datamash - dawg - dazzdb - dialign - dialign-tx - diamond-aligner - dindel - discosnp - disulfinder - dnaclust - dssp - dwgsim - e-mem - ecopcr - edtsurf - eigensoft - embassy-domainatrix - embassy-domalign - embassy-domsearch - emboss - examl - exonerate - falcon - fastahack - fastaq - fastdnaml - fastlink - fastml - fastqc - fastqtl - fasttree - fastx-toolkit - ffindex - figtree - fitgcp - flexbar - fml-asm - freebayes - freecontact - fsa - fsm-lite - gamgi - garli - garlic - gasic - gbrowse - gdpc - genometools - gentle - gff2aplot - gff2ps - ghemical - giira - glam2 - graphlan - grinder - gromacs - gubbins - gwama - harvest-tools - hhsuite - hilive - hisat2 - hmmer - hmmer2 - hyphy-mpi - hyphygui - idba - indelible - infernal - ipig - iqtree - iva - jaligner - jellyfish - jmodeltest - jmol - kalign - khmer - kineticstools - king-probe - kissplice - kmc - kmer - kraken - lambda-align - last-align - leaff - lefse - librg-utils-perl - libvcflib-tools - logol-bin - loki - ltrsift - macs - macsyfinder - maffilter - mafft - mapsembler2 - maq - maqview - mash - massxpert - mauve-aligner - melting - meryl - metaphlan2 - metastudent - mhap - microbegps - microbiomeutil - minia - miniasm - minimap - mipe - mira-assembler - mlv-smile - mothur - mptp - mrbayes - mummer - murasaki - muscle - mustang - nast-ier - ncbi-blast+ - ncbi-blast+-legacy - ncbi-entrez-direct - ncbi-epcr - ncbi-seg - ncbi-tools-bin - ncbi-tools-x11 - ncl-tools - ncoils - neobio - njplot - norsnet - norsp - paml - paraclu - parsinsert - parsnp - pbalign - pbbarcode - pbdagcon - pbgenomicconsensus - pbh5tools - pbhoney - pbjelly - pbsim - pbsuite - pdb2pqr - perlprimer - perm - pftools - phast - phipack - phybin - phylip - phyml - physamp - phyutility - picard-tools - piler - pirs - placnet - plasmidomics - plast - plink - plink1.9 - plip - poa - populations - poretools - prank - predictnls - predictprotein - prime-phylo - primer3 - proalign - probabel - probalign - probcons - proda - prodigal - profbval - profisis - profnet-bval - profnet-chop - profnet-con - profnet-isis - profnet-md - profnet-norsnet - profnet-prof - profnet-snapfun - profphd - profphd-net - profphd-utils - proftmb - progressivemauve - proteinortho - prottest - psortb - pycorrfit - pymol - pynast - pyscanfcs - python-cogent - python-treetime - python3-biomaj3 - qcumber - qtltools - quorum - r-bioc-annotate - r-bioc-biostrings - r-bioc-cummerbund - r-bioc-deseq2 - r-bioc-dnacopy - r-bioc-ebseq - r-bioc-genefilter - r-bioc-geneplotter - r-bioc-gviz - r-bioc-hilbertvis - r-bioc-limma - r-bioc-mergeomics - r-bioc-metagenomeseq - r-bioc-phyloseq - r-bioc-rtracklayer - r-cran-adegenet - r-cran-adephylo - r-cran-ape - r-cran-bio3d - r-cran-distory - r-cran-genabel - r-cran-phangorn - r-cran-pscbs - r-cran-qtl - r-cran-rotl - r-cran-seqinr - r-cran-treescape - r-cran-vegan - r-other-mott-happy.hbrem - radiant - rapmap - rasmol - raster3d - rate4site - raxml - ray - rdp-alignment - rdp-classifier - rdp-readseq - readseq - reapr - relion-bin - relion-bin+gui - repeatmasker-recon - reprof - rna-star - rnahybrid - roary - roguenarok - rsem - rtax - runcircos-gui - saint - salmon - sambamba - samtools - scrm - scythe - seaview - seer - seqan-apps - seqprep - seqtk - sga - sibsim4 - sickle - sigma-align - sim4 - sim4db - smalt - smithwaterman - smrtanalysis - snap - snap-aligner - sniffles - snp-sites - snpomatic - soapdenovo - soapdenovo2 - sortmerna - spaced - spades - sprai - spread-phy - squizz - sra-toolkit - srst2 - ssake - sspace - ssw-align - stacks - staden - staden-io-lib-utils - subread - suitename - sumaclust - sumatra - sumtrees - surankco - swarm - t-coffee - tabix - tantan - theseus - tigr-glimmer - tm-align - tnseq-transit - tophat - toppred - transdecoder - transrate-tools - transtermhp - tree-puzzle - treeview - treeviewx - trimmomatic - trinityrnaseq - uc-echo - varna - vcftools - velvet - velvetoptimiser - vsearch - wigeon - wise - zalign Task: med-bio-dev +Parent: debian-med Section: debian-med Description: Debian Med packages for development of bioinformatics applications This metapackage will install Debian packages which might be helpful for development of applications for biological research. -Relevance: 10 -Key: +Test-new-install: mark show +Key: med-bio-dev -Packages: list - bio-tradis - bioperl - bioperl-run - biosquid - libace-perl - libai-fann-perl - libbambamc-dev - libbamtools-dev - libbio-coordinate-perl - libbio-das-lite-perl - libbio-eutilities-perl - libbio-graphics-perl - libbio-mage-perl - libbio-mage-utils-perl - libbio-primerdesigner-perl - libbiococoa-dev - libbiod-dev - libbiojava-java - libbiojava4-java - libblasr-dev - libbpp-core-dev - libbpp-phyl-dev - libbpp-phyl-omics-dev - libbpp-popgen-dev - libbpp-qt-dev - libbpp-raa-dev - libbpp-seq-dev - libbpp-seq-omics-dev - libchado-perl - libconsensuscore-dev - libdivsufsort-dev - libfast5-dev - libfastahack-dev - libffindex0-dev - libfml-dev - libfreecontact-dev - libfreecontact-perl - libgenome-1.3-dev - libgenome-model-tools-music-perl - libgenome-perl - libgenometools0-dev - libgff-dev - libgkarrays-dev - libgo-perl - libhmsbeagle-dev - libhts-dev - libhtsjdk-java - libjebl2-java - libjloda-java - libkmer-dev - libmems-1.6-dev - libminimap-dev - libmuscle-3.7-dev - libncbi-vdb-dev - libncbi6-dev - libncl-dev - libngs-java - libngs-sdk-dev - libnhgri-blastall-perl - libpal-java - libpbbam-dev - libpbdata-dev - libpbihdf-dev - libpbseq-dev - libqes-dev - librcsb-core-wrapper0-dev - librdp-taxonomy-tree-java - librelion-dev - librg-blast-parser-perl - librg-reprof-bundle-perl - librostlab-blast0-dev - librostlab3-dev - libsbml5-dev - libseqlib-dev - libsmithwaterman-dev - libsnp-sites1-dev - libsort-key-top-perl - libsrf-dev - libssm-dev - libssw-dev - libssw-java - libstaden-read-dev - libswiss-perl - libtabixpp-dev - libtfbs-perl - libvcflib-dev - libvibrant6-dev - libzerg-perl - libzerg0-dev - mcl - pyfai - python-biom-format - python-cobra - python-cogent - python-corepywrap - python-freecontact - python-htseq - python-kineticstools - python-pbcommand - python-pbcore - python-pbh5tools - python-pysam - python-rdkit - python3-biomaj3 - python3-biopython - python3-biotools - python3-csb - python3-cutadapt - python3-dendropy - python3-fast5 - python3-gfapy - python3-gffutils - python3-intervaltree-bio - python3-ngs - python3-pbconsensuscore - python3-pybedtools - python3-pyfaidx - python3-pymummer - python3-pyvcf - python3-ruffus - python3-skbio - r-bioc-biobase - r-cran-genetics - r-cran-haplo.stats - r-cran-phylobase - r-cran-rncl - r-cran-rnexml - ruby-bio - ruby-crb-blast - sbmltoolbox - seqan-dev - -Task: med-bio-ngs -Section: debian-med -Description: Debian Med bioinformatics applications usable in Next Generation Sequencing - It aims at gettting packages which specialize in the processing or interpretation of - data generated with next- (and later-) generation high-thoughput sequencing technologies. -Relevance: 10 -Packages: list - bcftools - bedtools - blasr - bowtie - bwa - daligner - fastx-toolkit - last-align - libvcflib-tools - maq - mhap - picard-tools - r-bioc-hilbertvis - rna-star - samtools - sra-toolkit - ssake - tabix - tophat - vcftools - velvet - -Task: med-bio-phylogeny -Section: debian-med -Description: Debian Med phylogeny packages - This lists Debian packages related to phylogeny for use in life sciences. - The purpose of this compilation of packages is to have a handy subset of - from the med-bio metapackage which contains a lot more than only phylogeny - related software. -Relevance: 10 -Packages: list - altree - beast-mcmc - clustalw - clustalx - dialign - dialign-tx - exonerate - fastdnaml - figtree - hmmer - iqtree - jmodeltest - kalign - mrbayes - muscle - mustang - njplot - phylip - phyml - poa - populations - proalign - probalign - probcons - proda - prottest - seaview - sigma-align - spread-phy - t-coffee - tm-align - tree-puzzle - treeview - treeviewx Task: med-cloud +Parent: debian-med Section: debian-med Description: Debian Med bioinformatics applications usable in cloud computing This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not depend on graphical toolkits and therefore can fit on system images for use in cloud computing clusters, where space can be limited. -Relevance: 10 -Key: +Key: med-cloud -Packages: list - abyss - acedb-other - aevol - alien-hunter - altree - amap-align - ampliconnoise - anfo - aragorn - arden - autodock - autodock-vina - autogrid - bamtools - bedtools - biomaj - bioperl - bioperl-run - biosquid - blast2 - bowtie - bowtie2 - boxshade - bwa - cain - cassiopee - cd-hit - cdbfasta - circos - clearcut - clonalframe - clustalo - clustalw - concavity - conservation-code - datamash - dialign - dialign-tx - discosnp - disulfinder - dnaclust - dssp - embassy-domainatrix - embassy-domalign - embassy-domsearch - emboss - exonerate - fastdnaml - fastlink - fastqc - fasttree - fastx-toolkit - fitgcp - flexbar - freecontact - gasic - genometools - gff2aplot - gff2ps - giira - glam2 - grinder - gromacs - hhsuite - hmmer - idba - infernal - jellyfish - kalign - kissplice - last-align - loki - macs - mafft - mapsembler2 - maq - melting - minia - mipe - mira-assembler - mlv-smile - mothur - mrbayes - mummer - muscle - mustang - ncbi-epcr - ncbi-tools-bin - ncoils - neobio - paraclu - parsinsert - pdb2pqr - perm - phyml - phyutility - picard-tools - plink - poa - prank - prime-phylo - primer3 - probabel - probcons - proda - prodigal - pynast - python-biopython - python-cogent - python3-biopython - r-bioc-hilbertvis - r-cran-pvclust - r-cran-qtl - r-cran-vegan - r-other-mott-happy.hbrem - raster3d - readseq - rnahybrid - rtax - samtools - seqan-apps - sibsim4 - sigma-align - sim4 - smalt - snap - soapdenovo - soapdenovo2 - squizz - sra-toolkit - ssake - staden-io-lib-utils - t-coffee - tabix - theseus - tigr-glimmer - tophat - tree-puzzle - vcftools - velvet - wise - zalign Task: med-data +Parent: debian-med Section: debian-med Description: Debian Med drug databases This metapackage will install free drug databases and related applications. The database can be accessed by any EMR using the application. -Relevance: 10 -Key: +Key: med-data -Packages: list - freediams - freemedforms-freedata - python-hl7 Task: med-dental +Parent: debian-med Section: debian-med Description: Debian Med packages related to dental practice This metapackage contains dependencies for a collection of software which might be helpful for dentists to manage their practice. -Relevance: 10 -Key: +Key: med-dental -Packages: list - entangle - imagetooth - openmolar Task: med-epi +Parent: debian-med Section: debian-med Description: Debian Med epidemiology related packages This metapackage will install tools that are useful in epidemiological @@ -819,23 +63,11 @@ Description: Debian Med epidemiology related packages statistical investigation. It might be a good idea to read the paper "A short introduction to R for Epidemiology" at http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf -Relevance: 10 -Key: +Key: med-epi -Packages: list - epigrass - python-treetime - r-cran-diagnosismed - r-cran-epi - r-cran-epibasix - r-cran-epicalc - r-cran-epir - r-cran-epitools - r-cran-lexrankr - r-cran-seroincidence - r-cran-surveillance Task: med-his +Parent: debian-med Section: debian-med Description: Debian Med suggestions for Hospital Information Systems This metapackage contains dependencies for software and that could @@ -843,14 +75,11 @@ Description: Debian Med suggestions for Hospital Information Systems continuous work going on to package a ready to install system currently only preconditions are finished but hopefully helpful in hospitals anyway. -Relevance: 10 -Key: +Key: med-his -Packages: list - fis-gtm - orthanc-wsi Task: med-imaging +Parent: debian-med Section: debian-med Description: Debian Med image processing and visualization packages This metapackage will install Debian packages which might be useful in @@ -863,261 +92,111 @@ Description: Debian Med image processing and visualization packages software packages that can be used for visualization and for image processing - either from a graphical user interface, the command line, or implemented in workflows. -Relevance: 10 -Key: +Key: med-imaging -Packages: list - aeskulap - amide - bart - biosig-tools - camitk-imp - ctn - ctsim - dcm2niix - dcmtk - dicom3tools - dicomnifti - dicomscope - fw4spl - ginkgocadx - gwyddion - imagej - imagevis3d - invesalius - ismrmrd-tools - itksnap - king - libgdcm-tools - medcon - mia-tools - mia-viewit - mialmpick - minc-tools - mriconvert - mricron - mrtrix - nifti-bin - openslide-tools - orthanc - orthanc-wsi - pixelmed-apps - plastimatch - python-dicom - python-mvpa2 - python-nibabel - python-nitime - python-surfer - python-tifffile - sigviewer - sofa-apps - vtk-dicom-tools - xmedcon Task: med-imaging-dev +Parent: debian-med Section: debian-med Description: Debian Med image processing and visualization packages development This metapackage will install Debian packages which might be useful for developing applications for medical image processing and visualization. -Relevance: 10 -Key: +Key: med-imaging-dev -Packages: list - cimg-dev - ctn-dev - gmic - libbart-dev - libbiosig-dev - libcamitk-dev - libcifti-dev - libedf-dev - libinsighttoolkit4-dev - libismrmrd-dev - libmaxflow-dev - libmdc2-dev - libmia-2.4-dev - libmialm-dev - libmiaviewit-dev - libminc-dev - libnifti-dev - libopenigtlink-dev - libopenslide-dev - libpapyrus3-dev - libvigraimpex-dev - libvistaio-dev - libvolpack1-dev - libvtk-dicom-dev - libvtk6-dev - octave-bart - python-casmoothing - python-dicom - python-gdcm - python-imageio - python-mia - python-mvpa2 - python-nibabel - python-nitime - python-openslide - python-pyxnat - python-vigra - r-cran-rniftilib Task: med-laboratory +Parent: debian-med Section: debian-med Description: Debian Med suggestions for medical laboratories This metapackage contains dependencies for software and that could be useful ro run a medical laboratory. -Relevance: 10 -Key: +Key: med-laboratory -Packages: list - opencfu - orthanc-wsi Task: med-oncology +Parent: debian-med Section: debian-med Description: Debian Med packages for oncology This metapackage will install tools that are useful for radiation oncology. -Relevance: 10 -Key: +Key: med-oncology -Packages: list - dicompyler - orthanc-wsi Task: med-pharmacy +Parent: debian-med Section: debian-med Description: Debian Med packages for pharmaceutical research This metapackage contains dependencies for a collection of software and documentation which is useful for pharmaceutical research. -Relevance: 10 -Key: +Key: med-pharmacy -Packages: list - chemtool - r-cran-dosefinding Task: med-physics +Parent: debian-med Section: debian-med Description: Debian Med packages for medical physicists This metapackage contains dependencies for a collection of software and documentation which is useful for medical physicists in radiation oncology, diagnostics imaging and related fields. -Relevance: 10 -Key: +Key: med-physics -Packages: list - biosig-tools - octave - paw - paw++ - r-base Task: med-practice +Parent: debian-med Section: debian-med Description: Debian Med packages for practice management This metapackage contains dependencies for a collection of software which might be helpful for practitioners to manage their practice. -Relevance: 10 -Key: +Key: med-practice -Packages: list - entangle - freediams - freemedforms-emr - ginkgocadx - gnumed-client - gnumed-server - libchipcard-tools - orthanc - orthanc-wsi - qrisk2 - r-cran-medadherence - sleepyhead Task: med-psychology +Parent: debian-med Section: debian-med Description: Debian Med packages for psychology This metapackage contains dependencies for a collection of software which might be helpful for psychological research. -Relevance: 10 -Key: +Key: med-psychology -Packages: list - praat - psignifit - psychopy - r-cran-foreign - r-cran-psy Task: med-rehabilitation +Parent: debian-med Section: debian-med Description: Debian Med packages for rehabilitation technologies This metapackage will install tools that are useful for rehabilitation and therapy. -Relevance: 10 -Key: +Key: med-rehabilitation -Packages: list - sitplus Task: med-statistics +Parent: debian-med Section: debian-med Description: Debian Med statistics This metapackage will install packages which are helpful to do statistics with a special focus on tasks in medical care. -Relevance: 10 -Key: +Test-new-install: mark show +Key: med-statistics -Packages: list - r-bioc-limma - r-bioc-multtest - r-bioc-qvalue - r-cran-ade4 - r-cran-beeswarm - r-cran-pvclust - r-cran-randomforest Task: med-tools +Parent: debian-med Section: debian-med Description: Debian Med several tools This metapackage will install tools for several purposes in health care. Currently it contains some simple programs for Personal Health. -Relevance: 10 -Key: +Key: med-tools -Packages: list - cronometer - edfbrowser - galileo - hunspell-de-med - hunspell-en-med - nutsqlite - pcalendar - pondus - python-clips - python-fitbit - quitcount - r-cran-fitbitscraper - r-cran-fitcoach - wgerman-medical - workrave Task: med-typesetting +Parent: debian-med Section: debian-med Description: Debian Med support for typesetting and publishing This metapackage will install Debian packages that might be helpful for typesetting and publishing in medical care and structural biology. -Relevance: 10 -Key: +Key: med-typesetting -Packages: list - king - texlive-latex-extra - texlive-science diff --git a/debian/control b/debian/control index 7552d52..b7104f9 100644 --- a/debian/control +++ b/debian/control @@ -53,509 +53,582 @@ Description: Debian Med general config package you will conveniently get all free medical software which is available for Debian by simply installing the relevant metapackage +Package: med-all +Section: metapackages +Architecture: all +Recommends: med-bio, + med-bio-dev, + med-statistics +Suggests: med-cloud, + med-data, + med-dental, + med-epi, + med-his, + med-imaging, + med-imaging-dev, + med-laboratory, + med-oncology, + med-pharmacy, + med-physics, + med-practice, + med-psychology, + med-rehabilitation, + med-tools, + med-typesetting +Description: Default selection of tasks for Debian Med + This package is part of the Debian Med Pure Blend and installs all + tasks for a default installation of this blend. + Package: med-bio -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) Recommends: abacas, - abyss [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - acedb-other [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - acedb-other-belvu [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - acedb-other-dotter [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - adapterremoval [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - adun-core [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - aegean [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !powerpc !sparc !ia64 !mips !kfreebsd-i386], - aevol [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + abyss, + acedb-other, + adapterremoval, + adun-core, + aegean, + aevol, alien-hunter, - alter-sequence-alignment [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - altree [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - amap-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ampliconnoise [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - andi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - anfo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - aragorn [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + alter-sequence-alignment, + altree, + amap-align, + ampliconnoise, + andi, + anfo, + aragorn, arden, - ariba [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - art-nextgen-simulation-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + ariba, + art-nextgen-simulation-tools, artemis, artfastqgenerator, - atac [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - augustus [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - autodock [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - autodock-vina [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - autogrid [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - axe-demultiplexer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - baitfisher [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !powerpc !i386 !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel], - bamtools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + atac, + augustus, + autodock, + autodock-vina, + autogrid, + avogadro, + axe-demultiplexer, + baitfisher, + bamtools, barrnap, - bcftools [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !ia64 !mips !kfreebsd-i386 !i386], - beads [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + bcftools, + beads, beagle, beast-mcmc, beast2-mcmc, - bedops [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - bedtools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - berkeley-express [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - bio-eagle [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - bio-rainbow [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + bedops, + bedtools, + belvu, + berkeley-express, + bio-eagle, + bio-rainbow, bio-tradis, - blasr [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - bowtie [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !powerpc !i386 !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel], - bowtie2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - boxshade [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - bppphyview [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - bppsuite [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - brig [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - bwa [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - cassiopee [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - cd-hit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - cdbfasta [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - cgview [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + bitseq, + blasr, + blixem, + bowtie, + bowtie2, + boxshade, + bppphyview, + bppsuite, + brig, + bwa, + cassiopee, + cd-hit, + cdbfasta, + cgview, chimeraslayer, circlator, circos, - clearcut [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - clonalframe [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - clustalo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - clustalw [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - clustalx [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - codonw [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - concavity [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + clearcut, + clonalframe, + clonalframeml, + clonalorigin, + clustalo, + clustalw, + clustalx, + codonw, + concavity, conservation-code, - crac [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], + crac, csb, cutadapt, - daligner [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - datamash [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dawg [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dazzdb [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dialign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dialign-tx [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - diamond-aligner [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dindel [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - discosnp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - disulfinder [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dnaclust [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dssp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dwgsim [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - e-mem [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ecopcr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - edtsurf [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - eigensoft [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - embassy-domainatrix [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - embassy-domalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - embassy-domsearch [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - emboss [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - examl [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - exonerate [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - falcon [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !powerpc !i386 !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel], - fastahack [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + daligner, + datamash, + dawg, + dazzdb, + dialign, + dialign-tx, + diamond-aligner, + dindel, + discosnp, + disulfinder, + dnaclust, + dotter, + dssp, + dwgsim, + e-mem, + ecopcr, + edtsurf, + eigensoft, + embassy-domainatrix, + embassy-domalign, + embassy-domsearch, + emboss, + examl, + exonerate, + falcon, + fastahack, fastaq, - fastdnaml [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - fastlink [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - fastml [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + fastdnaml, + fastlink, + fastml, fastqc, - fastqtl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - fasttree [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - fastx-toolkit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ffindex [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + fastqtl, + fasttree, + fastx-toolkit, + ffindex, figtree, - fitgcp [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - flexbar [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - fml-asm [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - freebayes [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - freecontact [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - fsa [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - fsm-lite [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !powerpc !i386 !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel], - gamgi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - garli [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - garlic [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - gasic [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], + fitgcp, + flexbar, + fml-asm, + freebayes, + freecontact, + fsa, + fsm-lite, + gamgi, + garli, + garlic, + gasic, gbrowse, - gdpc [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - genometools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - gentle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - gff2aplot [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + gdpc, + genometools, + gentle, + gff2aplot, gff2ps, - ghemical [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - giira [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - glam2 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + ghemical, + giira, + glam2, graphlan, grinder, - gromacs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - gubbins [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - gwama [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - harvest-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - hhsuite [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - hilive [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - hisat2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - hmmer [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - hmmer2 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - hyphy-mpi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | hyphy-pt [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - hyphygui [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - idba [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - indelible [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - infernal [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - ipig [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - iqtree [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - iva [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], + gromacs, + gubbins, + gwama, + harvest-tools, + hhsuite, + hilive, + hisat2, + hmmer, + hmmer2, + hyphy-mpi | hyphy-pt, + hyphygui, + idba, + indelible, + infernal, + ipig, + iqtree, + iva, jaligner, - jellyfish [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], + jellyfish, jmodeltest, jmol, - kalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - khmer [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], + kalign, + khmer, kineticstools, - king-probe [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - kissplice [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - kmc [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + king-probe, + kissplice, + kmc, kmer, - kraken [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - lambda-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - last-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - leaff [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + kraken, + lambda-align, + last-align, + leaff, lefse, librg-utils-perl, - libvcflib-tools [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - logol-bin [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - loki [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ltrsift [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - macs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + libvcflib-tools, + logol-bin, + loki, + ltrsift, + macs, macsyfinder, - maffilter [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mafft [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mapsembler2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !powerpc !sparc !ia64 !mips !kfreebsd-i386 !mipsel], - maq [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - maqview [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mash [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + maffilter, + mafft, + mapsembler2, + maq, + maqview, + mash, massxpert, - mauve-aligner [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - melting [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - meryl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + mauve-aligner, + melting, + meryl, metaphlan2, metastudent, mhap, microbegps, microbiomeutil, - minia [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - miniasm [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - minimap [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + minia, + miniasm, + minimap, mipe, - mira-assembler [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mlv-smile [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mothur [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mptp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mrbayes [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel], - mummer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - murasaki [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - muscle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mustang [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - nast-ier [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ncbi-blast+ [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + mira-assembler, + mlv-smile, + mothur, + mptp, + mrbayes, + mummer, + murasaki, + muscle, + mustang, + nast-ier, + ncbi-blast+, ncbi-blast+-legacy, - ncbi-entrez-direct [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ncbi-epcr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ncbi-seg [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ncbi-tools-bin [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ncbi-tools-x11 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ncl-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ncoils [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + ncbi-entrez-direct, + ncbi-epcr, + ncbi-seg, + ncbi-tools-bin, + ncbi-tools-x11, + ncl-tools, + ncoils, neobio, - njplot [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + njplot, norsnet, norsp, - paml [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - paraclu [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - parsinsert [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - parsnp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + paml, + paraclu, + parsinsert, + parsnp, + patman, pbalign, - pbbarcode [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - pbdagcon [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], + pbbarcode, + pbdagcon, pbgenomicconsensus, pbh5tools, pbhoney, pbjelly, - pbsim [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + pbsim, pbsuite, - pdb2pqr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + pdb2pqr, perlprimer, - perm [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - pftools [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - phast [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - phipack [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - phybin [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !mips !kfreebsd-i386 !mipsel], - phylip [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - phyml [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - physamp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - phyutility [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + perm, + pftools, + phast, + phipack, + phybin, + phylip, + phyml, + physamp, + phyutility, picard-tools, - piler [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - pirs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + piler, + pirs, placnet, plasmidomics, - plast [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - plink [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - plink1.9 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !arm64 !ia64 !mips !kfreebsd-i386], + plast, + plink, + plink1.9, plip, - poa [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - populations [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + poa, + populations, poretools, - prank [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + prank, predictnls, predictprotein, - prime-phylo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - primer3 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - proalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - probabel [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - probalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - probcons [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - proda [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - prodigal [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armhf !ia64 !kfreebsd-i386], + prime-phylo, + primer3, + proalign, + probabel, + probalign, + probcons, + proda, + prodigal, profbval, profisis, - profnet-bval [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - profnet-chop [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - profnet-con [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - profnet-isis [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - profnet-md [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - profnet-norsnet [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - profnet-prof [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - profnet-snapfun [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + profnet-bval, + profnet-chop, + profnet-con, + profnet-isis, + profnet-md, + profnet-norsnet, + profnet-prof, + profnet-snapfun, profphd, - profphd-net [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - profphd-utils [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - proftmb [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - progressivemauve [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - proteinortho [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + profphd-net, + profphd-utils, + proftmb, + progressivemauve, + proteinortho, prottest, - psortb [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - pycorrfit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - pymol [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + psortb, + pycorrfit, + pymol, pynast, - pyscanfcs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - python-cogent [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + pyscanfcs, + python-cogent, python-treetime, python3-biomaj3, qcumber, - qtltools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - quorum [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - r-bioc-annotate [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-bioc-biostrings [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + qtltools, + quorum, + r-bioc-annotate, + r-bioc-biostrings, r-bioc-cummerbund, - r-bioc-deseq2 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !ia64 !kfreebsd-i386], - r-bioc-dnacopy [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + r-bioc-deseq2, + r-bioc-dnacopy, r-bioc-ebseq, - r-bioc-genefilter [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + r-bioc-genefilter, r-bioc-geneplotter, r-bioc-gviz, - r-bioc-hilbertvis [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-bioc-limma [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + r-bioc-hilbertvis, + r-bioc-limma, r-bioc-mergeomics, r-bioc-metagenomeseq, r-bioc-phyloseq, - r-bioc-rtracklayer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-adegenet [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-adephylo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-ape [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-bio3d [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-distory [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-genabel [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-phangorn [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-pscbs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-qtl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + r-bioc-rtracklayer, + r-cran-adegenet, + r-cran-adephylo, + r-cran-ape, + r-cran-bio3d, + r-cran-distory, + r-cran-genabel, + r-cran-phangorn, + r-cran-pscbs, + r-cran-qtl, r-cran-rotl, - r-cran-seqinr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-treescape [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !ia64 !kfreebsd-i386], - r-cran-vegan [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-other-mott-happy.hbrem [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + r-cran-seqinr, + r-cran-treescape, + r-cran-vegan, + r-other-mott-happy.hbrem, radiant, - rapmap [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - rasmol [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !ppc64el !sparc !ia64 !kfreebsd-i386], - raster3d [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - rate4site [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - raxml [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - ray [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + rambo-k, + rapmap, + raster3d, + rate4site, + raxml, + ray, rdp-alignment, rdp-classifier, rdp-readseq, - readseq [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - reapr [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !ia64 !mips !kfreebsd-i386], - relion-bin [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64] | relion-bin+mpi [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - relion-bin+gui [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64] | relion-bin+mpi+gui [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - repeatmasker-recon [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + readseq, + reapr, + relion-bin | relion-bin+mpi, + relion-bin+gui | relion-bin+mpi+gui, + repeatmasker-recon, reprof, - rna-star [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - rnahybrid [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !ia64 !kfreebsd-i386], + rna-star, + rnahybrid, roary, - roguenarok [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - rsem [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !powerpc !i386 !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel], + roguenarok, + rsem, rtax, - runcircos-gui [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - saint [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - salmon [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - sambamba [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - samtools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - scrm [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - scythe [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - seaview [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - seer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - seqan-apps [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel], - seqprep [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - seqtk [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sga [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - sibsim4 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sickle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sigma-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sim4 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sim4db [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - smalt [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - smithwaterman [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + runcircos-gui, + saint, + salmon, + sambamba, + samtools, + scrm, + scythe, + seaview, + seer, + seqan-apps, + seqprep, + seqtk, + sga, + sibsim4, + sickle, + sigma-align, + sim4, + sim4db, + smalt, + smithwaterman, smrtanalysis, - snap [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - snap-aligner [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - sniffles [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - snp-sites [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - snpomatic [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - soapdenovo [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - soapdenovo2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - sortmerna [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - spaced [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - spades [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - sprai [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + snap, + snap-aligner, + sniffles, + snp-sites, + snpomatic, + soapdenovo, + soapdenovo2, + sortmerna, + spaced, + spades, + sprai, spread-phy, - squizz [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sra-toolkit [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - srst2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], + squizz, + sra-toolkit, + srst2, ssake, sspace, - ssw-align [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - stacks [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - staden [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - staden-io-lib-utils [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - subread [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !sparc !ia64 !mips !kfreebsd-i386 !mipsel], - suitename [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sumaclust [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sumatra [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + ssw-align, + stacks, + staden, + staden-io-lib-utils, + subread, + suitename, + sumaclust, + sumatra, sumtrees, surankco, - swarm [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - t-coffee [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - tabix [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - tantan [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - theseus [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - tigr-glimmer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - tm-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - tnseq-transit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - tophat [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - toppred [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + swarm, + t-coffee, + tabix, + tantan, + theseus, + tigr-glimmer, + tm-align, + tnseq-transit, + tophat, + toppred, transdecoder, - transrate-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - transtermhp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - tree-puzzle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | tree-ppuzzle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + transrate-tools, + transtermhp, + tree-puzzle | tree-ppuzzle, treeview, - treeviewx [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + treeviewx, trimmomatic, - trinityrnaseq [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - uc-echo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + trinityrnaseq, + uc-echo, varna, - vcftools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - velvet [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | velvet-long [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + vcftools, + velvet | velvet-long, velvetoptimiser, - vsearch [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], + vsearch, wigeon, - wise [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - zalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] + wise, + zalign Suggests: acacia, adun.app, amos-assembler, + amoscmp, + annovar, apollo, + arachne, arb, + asap, autodocktools, axparafit, axpcoords, bagpipe, ballview, + bambus, bandage, - belvu, biceps, + big-blast, bigsdb, - biomaj, - biomaj-watcher, - bitseq, blat, blimps-utils, - blixem, blobology, + btk-core, + cactus, + caftools, cain, canu, card-rgi, + ccs, + cdna-db, + cellprofiler, centrifuge, cinema, - clonalframeml, - clonalorigin, cluster3, + cmap, cnvkit, + compclust, condetri, contrafold, + contralign, coot, + copycat, crossbow, crux-toolkit, cufflinks, cytoscape, + das-proserver, dascrubber, dazzle, + decipher, deepnano, - dotter, + e-hive, ea-utils, ecell, + elph, embassy-phylip, emboss-explorer, emmax, + emperor, ensembl, + est-db, + estferret, + estscan, euler-sr, euler2, exabayes, + exalt, + excavator, + fasta, fasta3, ffp, + figaro, filo, + finex, forester, + forge, galaxy, + gassst, gatb-core, gatk, + gbioseq, + gbrowse-syn, + genemark, + genesplicer, + genetrack, + genezilla, + genographer, getdata, + glimmerhmm, gmap, + gmv, grabix, - grogui, haploview, hawkeye, + hexamer, + hilbertvisgui, hinge, htqc, igv, inspect, jalview, jbrowse, - kclust, + jigsaw, + jstreeview, kempbasu, lagan, + lamarc, lofreq, - logomat-m, + lucy, mach-haplotyper, mage2tab, + maker2, malt, manta, mapdamage, martj, maude, + maxd, melting-gui, meme, mesquite, metabit, + metarep, metastudent-data, metastudent-data-2, + metastudent-data-3, mgltools-cadd, mgltools-pmv, mgltools-vision, + migrate, + minimus, + mirbase, mobyle, mobyle-programs, mobyle-tutorials, @@ -564,7 +637,10 @@ Suggests: acacia, mosaik-aligner, mpsqed, mrs, + msatfinder, mugsy, + mummergpu, + mview, nanocall, nanook, nanopolish, @@ -574,24 +650,37 @@ Suggests: acacia, nw-align, oases, obitools, + obo-edit, + oligoarrayaux, + omegamap, openms, + operondb, pal2nal, paleomix, + partigene, partitionfinder, - patman, patristic, pcma, + pfaat, + phagefinder, + phpphylotree, + phylographer, phylophlan, phyloviz-core, + phylowin, pipasic, plato, profit, prokka, + prot4est, pscan-tfbs, psipred, pssh2, + pyrophosphate-tools, + python-orange, python-reaper, qiime, + qtlcart, qualimap, r-bioc-annotationhub, r-bioc-aroma.light, @@ -604,12 +693,15 @@ Suggests: acacia, r-cran-qqman, r-cran-rentrez, r-other-apmswapp, - r-other-valdar-bagphenotype.library, raccoon, - rambo-k, + rasmol, raxml-ng, + rbs-finder, repeatmasker, + rmblast, roadtrips, + roche454ace2caf, + rose, rosetta, rsat, sap, @@ -623,42 +715,58 @@ Suggests: acacia, sistr, situs, snpeff, + soapaligner, + soapsnp, + solvate, sparta, + spice, + splitstree, ssaha, strap, strap-base, + tab2mage, tacg, + taverna, + taxinspector, + tetra, tide, tigr-glimmer-mg, tn-seqexplorer, topp, + trace2dbest, + tracetuner, + treebuilder3d, + treetime, + tripal, trnascan-se, tvc, + twain, ugene, umap, unc-fish, + uniprime, varmatch, varscan, vienna-rna, vmd, + x-tandem-pipeline, zodiac-zeden Description: Debian Med bioinformatics packages This metapackage will install Debian packages for use in molecular biology, structural biology and other biological sciences. Package: med-bio-dev -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) Recommends: bio-tradis, bioperl, bioperl-run, - biosquid [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libace-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libai-fann-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libbambamc-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libbamtools-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + biosquid, + libace-perl, + libai-fann-perl, + libbambamc-dev, + libbamtools-dev, libbio-coordinate-perl, libbio-das-lite-perl, libbio-eutilities-perl, @@ -666,126 +774,130 @@ Recommends: bio-tradis, libbio-mage-perl, libbio-mage-utils-perl, libbio-primerdesigner-perl, - libbiococoa-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libbiod-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], + libbiococoa-dev, + libbiod-dev, libbiojava-java, libbiojava4-java, - libblasr-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - libbpp-core-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libbpp-phyl-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libbpp-phyl-omics-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libbpp-popgen-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libbpp-qt-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libbpp-raa-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libbpp-seq-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libbpp-seq-omics-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + libblasr-dev, + libbpp-core-dev, + libbpp-phyl-dev, + libbpp-phyl-omics-dev, + libbpp-popgen-dev, + libbpp-qt-dev, + libbpp-raa-dev, + libbpp-seq-dev, + libbpp-seq-omics-dev, libchado-perl, - libconsensuscore-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - libdivsufsort-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + libconsensuscore-dev, + libdivsufsort-dev, libfast5-dev, - libfastahack-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libffindex0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libfml-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - libfreecontact-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libfreecontact-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libgenome-1.3-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + libfastahack-dev, + libffindex0-dev, + libfml-dev, + libfreecontact-dev, + libfreecontact-perl, + libgenome-1.3-dev, libgenome-model-tools-music-perl, libgenome-perl, - libgenometools0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libgff-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libgkarrays-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + libgenometools0-dev, + libgff-dev, + libgkarrays-dev, libgo-perl, - libhmsbeagle-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel], - libhts-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + libhmsbeagle-dev, + libhts-dev, libhtsjdk-java, libjebl2-java, libjloda-java, - libkmer-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libmems-1.6-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libminimap-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libmuscle-3.7-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libncbi-vdb-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - libncbi6-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libncl-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libngs-java [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - libngs-sdk-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], + libkmer-dev, + libmems-1.6-dev, + libminimap-dev, + libmuscle-3.7-dev, + libncbi-vdb-dev, + libncbi6-dev, + libncl-dev, + libngs-java, + libngs-sdk-dev, libnhgri-blastall-perl, libpal-java, - libpbbam-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - libpbdata-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - libpbihdf-dev [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], + libpbbam-dev, + libpbdata-dev, + libpbihdf-dev, libpbseq-dev, - libqes-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - librcsb-core-wrapper0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + libqes-dev, + librcsb-core-wrapper0-dev, librdp-taxonomy-tree-java, - librelion-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - librg-blast-parser-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + librelion-dev, + librg-blast-parser-perl, librg-reprof-bundle-perl, - librostlab-blast0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - librostlab3-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libsbml5-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !powerpc !sparc !ia64 !mips !kfreebsd-i386], - libseqlib-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - libsmithwaterman-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libsnp-sites1-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libsort-key-top-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libsrf-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libssm-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libssw-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - libssw-java [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - libstaden-read-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + librostlab-blast0-dev, + librostlab3-dev, + libsbml5-dev, + libseqlib-dev, + libsmithwaterman-dev, + libsnp-sites1-dev, + libsort-key-top-perl, + libsrf-dev, + libssm-dev, + libssw-dev, + libssw-java, + libstaden-read-dev, libswiss-perl, - libtabixpp-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libtfbs-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libvcflib-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - libvibrant6-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libzerg-perl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libzerg0-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mcl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + libtabixpp-dev, + libtfbs-perl, + libvcflib-dev, + libvibrant6-dev, + libzerg-perl, + libzerg0-dev, + mcl, pyfai, - python-biom-format [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !ia64 !mips !kfreebsd-i386], - python-cobra [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - python-cogent [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - python-corepywrap [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - python-freecontact [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - python-htseq [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - python-kineticstools [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], + python-biom-format, + python-cobra, + python-cogent, + python-corepywrap, + python-freecontact, + python-htseq, + python-kineticstools, python-pbcommand, python-pbcore, - python-pbh5tools [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - python-pysam [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - python-rdkit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armhf !ia64 !kfreebsd-i386], + python-pbh5tools, + python-pysam, + python-rdkit, python3-biomaj3, - python3-biopython [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | python-biopython [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + python3-biopython | python-biopython, python3-biotools | python-biotools, python3-csb | python-csb, - python3-cutadapt [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | python-cutadapt [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + python3-cutadapt | python-cutadapt, python3-dendropy | python-dendropy, - python3-fast5 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | python-fast5 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - python3-gfapy [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + python3-fast5 | python-fast5, + python3-gfapy, python3-gffutils, python3-intervaltree-bio | python-intervaltree-bio, - python3-ngs [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64] | python-ngs [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - python3-pbconsensuscore [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64] | python-pbconsensuscore [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - python3-pybedtools [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], + python3-ngs | python-ngs, + python3-pbconsensuscore | python-pbconsensuscore, + python3-pybedtools, python3-pyfaidx | python-pyfaidx, python3-pymummer, - python3-pyvcf [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | python-pyvcf [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + python3-pyvcf | python-pyvcf, python3-ruffus | python-ruffus, - python3-skbio [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - r-bioc-biobase [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + python3-skbio, + r-bioc-biobase, r-cran-genetics, - r-cran-haplo.stats [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !ia64 !kfreebsd-i386], - r-cran-phylobase [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-rncl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + r-cran-haplo.stats, + r-cran-phylobase, + r-cran-rncl, r-cran-rnexml, ruby-bio, ruby-crb-blast, sbmltoolbox, seqan-dev -Suggests: libbam-dev, +Suggests: bioclipse, + libbam-dev, libdisorder-dev, libforester-java, libfreecontact-doc, + libgatbcore-dev, + libgff-perl, + libgoby-java, libgtextutils-dev, libopenms-dev, libpbcopper-dev, @@ -797,20 +909,29 @@ Suggests: libbam-dev, mgltools-networkeditor, mgltools-pybabel, mgltools-vision, + octace-bioinfo, + octave-bioinfo, + python-bd2k, python-biomaj3, python-biopython-doc, + python-bx, + python-consensuscore2, + python-ete3, + python-hyphy, + python-misopy, python-mmtk, + python-pyfasta, python-pyflow, python-roadrunner, python-screed, - python3-bd2k | python-bd2k, + python3-bd2k, python3-biopython-sql | python-biopython-sql, - python3-bx | python-bx, - python3-consensuscore2 | python-consensuscore2, - python3-ete3 | python-ete3, - python3-hyphy | python-hyphy, - python3-misopy | python-misopy, - python3-pyfasta | python-pyfasta, + python3-bx, + python3-consensuscore2, + python3-ete3, + python3-hyphy, + python3-misopy, + python3-pyfasta, r-bioc-affy, r-bioc-affyio, r-bioc-altcdfenvs, @@ -844,159 +965,157 @@ Description: Debian Med packages for development of bioinformatics applications for development of applications for biological research. Package: med-cloud -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) -Recommends: abyss [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - acedb-other [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - aevol [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) +Recommends: abyss, + acedb-other, + aevol, alien-hunter, - altree [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - amap-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ampliconnoise [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - anfo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - aragorn [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + altree, + amap-align, + ampliconnoise, + anfo, + aragorn, arden, - autodock [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - autodock-vina [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - autogrid [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - bamtools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - bedtools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - biomaj, + autodock, + autodock-vina, + autogrid, + bamtools, + bedtools, bioperl, bioperl-run, - biosquid [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + biosquid, blast2, - bowtie [!s390 !hurd-i386 !kfreebsd-amd64 !sparc !powerpc !i386 !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel], - bowtie2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - boxshade [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - bwa [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], + bowtie, + bowtie2, + boxshade, + bwa, cain, - cassiopee [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - cd-hit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - cdbfasta [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + cassiopee, + cd-hit, + cdbfasta, circos, - clearcut [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - clonalframe [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - clustalo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - clustalw [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - concavity [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + clearcut, + clonalframe, + clustalo, + clustalw, + concavity, conservation-code, - datamash [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dialign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dialign-tx [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - discosnp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - disulfinder [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dnaclust [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dssp [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - embassy-domainatrix [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - embassy-domalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - embassy-domsearch [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - emboss [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - exonerate [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - fastdnaml [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - fastlink [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + datamash, + dialign, + dialign-tx, + discosnp, + disulfinder, + dnaclust, + dssp, + embassy-domainatrix, + embassy-domalign, + embassy-domsearch, + emboss, + exonerate, + fastdnaml, + fastlink, fastqc, - fasttree [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - fastx-toolkit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - fitgcp [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - flexbar [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - freecontact [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - gasic [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - genometools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - gff2aplot [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + fasttree, + fastx-toolkit, + fitgcp, + flexbar, + freecontact, + gasic, + genometools, + gff2aplot, gff2ps, - giira [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - glam2 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + giira, + glam2, grinder, - gromacs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - hhsuite [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - hmmer [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - idba [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - infernal [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - jellyfish [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - kalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - kissplice [!s390 !hurd-i386 !kfreebsd-amd64 !s390x !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !i386], - last-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - loki [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - macs [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mafft [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mapsembler2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !powerpc !sparc !ia64 !mips !kfreebsd-i386 !mipsel], - maq [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - melting [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - minia [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + gromacs, + hhsuite, + hmmer, + idba, + infernal, + jellyfish, + kalign, + kissplice, + last-align, + loki, + macs, + mafft, + mapsembler2, + maq, + melting, + minia, mipe, - mira-assembler [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mlv-smile [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mothur [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mrbayes [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !ia64 !mips !kfreebsd-i386 !mipsel], - mummer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - muscle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mustang [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ncbi-epcr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ncbi-tools-bin [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ncoils [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + mira-assembler, + mlv-smile, + mothur, + mrbayes, + mummer, + muscle, + mustang, + ncbi-epcr, + ncbi-tools-bin, + ncoils, neobio, - paraclu [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - parsinsert [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - pdb2pqr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - perm [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - phyml [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - phyutility [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + paraclu, + parsinsert, + pdb2pqr, + perm, + phyml, + phyutility, picard-tools, - plink [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - poa [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - prank [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - prime-phylo [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - primer3 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - probabel [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - probcons [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - proda [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - prodigal [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armhf !ia64 !kfreebsd-i386], + plink, + poa, + prank, + prime-phylo, + primer3, + probabel, + probcons, + proda, + prodigal, pynast, - python-biopython [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - python-cogent [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - python3-biopython [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-bioc-hilbertvis [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + python-biopython, + python-cogent, + python3-biomaj3-cli, + python3-biopython, + r-bioc-hilbertvis, r-cran-pvclust, - r-cran-qtl [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-vegan [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-other-mott-happy.hbrem [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - raster3d [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - readseq [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - rnahybrid [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !ia64 !kfreebsd-i386], + r-cran-qtl, + r-cran-vegan, + r-other-mott-happy.hbrem, + raster3d, + readseq, + rnahybrid, rtax, - samtools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - seqan-apps [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel], - sibsim4 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sigma-align [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sim4 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - smalt [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - snap [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - soapdenovo [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - soapdenovo2 [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - squizz [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sra-toolkit [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], + samtools, + seqan-apps, + sibsim4, + sigma-align, + sim4, + smalt, + snap, + soapdenovo, + soapdenovo2, + squizz, + sra-toolkit, ssake, - staden-io-lib-utils [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - t-coffee [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - tabix [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - theseus [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - tigr-glimmer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - tophat [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !arm64 !ia64 !mips !kfreebsd-i386 !mipsel !i386], - tree-puzzle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | tree-ppuzzle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - vcftools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - velvet [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - wise [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - zalign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] + staden-io-lib-utils, + t-coffee, + tabix, + theseus, + tigr-glimmer, + tophat, + tree-puzzle | tree-ppuzzle, + vcftools, + velvet, + wise, + zalign Suggests: bagpipe, cufflinks, embassy-phylip, filo, gmap, - qiime, - r-other-valdar-bagphenotype.library + qiime Description: Debian Med bioinformatics applications usable in cloud computing This metapackage will install Debian packages related to molecular biology, structural biology and bioinformatics for use in life sciences, that do not @@ -1004,25 +1123,24 @@ Description: Debian Med bioinformatics applications usable in cloud computing in cloud computing clusters, where space can be limited. Package: med-data -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) -Recommends: freediams [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) +Recommends: freediams, freemedforms-freedata, python-hl7 -Suggests: sleepyhead +Suggests: drugref.org, + sleepyhead Description: Debian Med drug databases This metapackage will install free drug databases and related applications. The database can be accessed by any EMR using the application. Package: med-dental -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) -Recommends: entangle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) +Recommends: entangle, imagetooth, openmolar Description: Debian Med packages related to dental practice @@ -1030,25 +1148,25 @@ Description: Debian Med packages related to dental practice which might be helpful for dentists to manage their practice. Package: med-epi -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) -Recommends: epigrass [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) +Recommends: epigrass, python-treetime, r-cran-diagnosismed, - r-cran-epi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + r-cran-epi, r-cran-epibasix, r-cran-epicalc, r-cran-epir, r-cran-epitools, - r-cran-lexrankr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + r-cran-lexrankr, r-cran-seroincidence, - r-cran-surveillance [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] + r-cran-surveillance Suggests: netepi-analysis, netepi-collection, r-cran-cmprsk, r-cran-msm, + repast, shiny-server, ushahidi Description: Debian Med epidemiology related packages @@ -1059,17 +1177,23 @@ Description: Debian Med epidemiology related packages http://staff.pubhealth.ku.dk/%7Ebxc/Epi/R-intro.pdf Package: med-his -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) Recommends: fis-gtm, - orthanc-wsi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] + orthanc-wsi Suggests: care2x, ewd-920, + hkma-cms, + ipath, + openeyes, + openmaxims, openmrs, + oscar-mcmaster, + patientos, tryton-modules-health, - vista-foia + vista-foia, + world-vista Description: Debian Med suggestions for Hospital Information Systems This metapackage contains dependencies for software and that could be useful ro run a Hospital Information System. While there is @@ -1078,62 +1202,65 @@ Description: Debian Med suggestions for Hospital Information Systems anyway. Package: med-imaging -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) -Recommends: aeskulap [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - amide [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - bart [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - biosig-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - camitk-imp [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - ctn [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ctsim [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dcm2niix [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dcmtk [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dicom3tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - dicomnifti [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) +Recommends: aeskulap, + amide, + bart, + biosig-tools, + camitk-imp, + ctn, + ctsim, + dcm2niix, + dcmtk, + dicom3tools, + dicomnifti, dicomscope, - fw4spl [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - ginkgocadx [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - gwyddion [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + fw4spl, + ginkgocadx, + gwyddion, imagej, - imagevis3d [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + imagevis3d, invesalius, - ismrmrd-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armhf !ia64 !kfreebsd-i386], - itksnap [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], + ismrmrd-tools, + itksnap, king, - libgdcm-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - medcon [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mia-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mia-viewit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mialmpick [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - minc-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mriconvert [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - mricron [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !ia64 !mips !kfreebsd-i386 !mipsel], - mrtrix [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - nifti-bin [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - openslide-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - orthanc [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - orthanc-wsi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + libgdcm-tools, + medcon, + mia-tools, + mia-viewit, + mialmpick, + minc-tools, + mriconvert, + mricron, + mrtrix, + nifti-bin, + openslide-tools, + orthanc, + orthanc-wsi, pixelmed-apps, - plastimatch [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], + plastimatch, python-dicom, python-mvpa2, python-nibabel, + python-nipype, python-nitime, python-surfer, - python-tifffile [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sigviewer [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sofa-apps [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - vtk-dicom-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - xmedcon [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] + python-tifffile, + sigviewer, + sofa-apps, + vtk-dicom-tools, + xmedcon Suggests: afni, ants, bart-view, bioimagesuite, bioimagexd, + blox, + brainvisa, caret, + cdmedicpacs, cellprofiler, cmtk, connectomeviewer, @@ -1143,41 +1270,74 @@ Suggests: afni, conquest-postgres, conquest-sqlite, crea, + dcm4chee, + devide, + dicom4j, dicoogle, + drjekyll, + dti-query, + dtitk, + ecg2png, + eeglab, elastix, + fiji, freesurfer, fsl, fslview, gdf-tools, + gimias, + hid, imagemagick, imview, + incf-nidash-oneclick-clients, insightapplications, + isis, + jemris, jist, kradview, libdcm4che-java, + lipsia, + maris, mayam, + medisnap, + mesa-test-tools, micromanager, mipav, + miview, + mni-autoreg, mni-colin27-nifti, + mni-icbm152-nlin-2009, + mni-n3, + mrisim, odin, + omero, + opendicom.net, openelectrophy, + openmeeg-tools, + opensourcepacs, openwalnut-qt4, orthanc-dicomweb, orthanc-imagej, orthanc-postgresql, orthanc-webviewer, paraview, + piano, pngquant, - python-dipy, + pymeg, python-nipy, - python-nipype, python-pyxid, science-workflow, + slicer, + stabilitycalc, + stir, teem-apps, + tempo, trimage, + via-bin, visit, vmtk, - voxbo + voxbo, + xnat Description: Debian Med image processing and visualization packages This metapackage will install Debian packages which might be useful in medical image processing and visualization. @@ -1191,49 +1351,51 @@ Description: Debian Med image processing and visualization packages workflows. Package: med-imaging-dev -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) Recommends: cimg-dev, - ctn-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - gmic [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libbart-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libbiosig-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libcamitk-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - libcifti-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libedf-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libinsighttoolkit4-dev [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], - libismrmrd-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !armhf !ia64 !kfreebsd-i386], - libmaxflow-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libmdc2-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libmia-2.4-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libmialm-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libmiaviewit-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libminc-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libnifti-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libopenigtlink-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libopenslide-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libpapyrus3-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libvigraimpex-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libvistaio-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libvolpack1-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libvtk-dicom-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - libvtk6-dev [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + ctn-dev, + gmic, + libbart-dev, + libbiosig-dev, + libcamitk-dev, + libcifti-dev, + libedf-dev, + libgdcm2-dev, + libinsighttoolkit4-dev, + libismrmrd-dev, + libmaxflow-dev, + libmdc2-dev, + libmia-2.4-dev, + libmialm-dev, + libmiaviewit-dev, + libminc-dev, + libnifti-dev, + libopenigtlink-dev, + libopenslide-dev, + libpapyrus3-dev, + libvigraimpex-dev, + libvistaio-dev, + libvolpack1-dev, + libvtk-dicom-dev, + libvtk6-dev, octave-bart, - python-casmoothing [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + python-casmoothing, python-dicom, - python-gdcm [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], python-imageio, - python-mia [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] | python3-mia [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + python-mia | python3-mia, + python-mne, python-mvpa2, python-nibabel, + python-nipype, python-nitime, - python-openslide [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + python-openslide, python-pyxnat, - python-vigra [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-rniftilib [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] -Suggests: libbio-formats-java, + python-vigra, + r-cran-rniftilib +Suggests: emokit, + libbio-formats-java, libcamp-dev, libctk-dev, libcv-dev, @@ -1243,24 +1405,25 @@ Suggests: libbio-formats-java, libgiftiio-dev, libics-dev, liblimereg-dev, + libmni-perllib-perl, libnifti-doc, libodil0-dev, + libopenmeeg-dev, libopenslide-java, libopensurgsim-dev, libteem-dev, + libvia-dev, libvmtk-dev, - libvtk-dicom-java, libvtkedge-dev, libvxl1-dev, libxdffileio-dev, + octave-dicom, octave-gdf, odin, python-cfflib, python-dipy, python-libavg, - python-mne, python-nipy, - python-nipype, python-tifffile, python-vmtk Description: Debian Med image processing and visualization packages development @@ -1269,36 +1432,36 @@ Description: Debian Med image processing and visualization packages development visualization. Package: med-laboratory -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) -Recommends: opencfu [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - orthanc-wsi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] -Suggests: openfreezer +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) +Recommends: opencfu, + orthanc-wsi +Suggests: catissuesuite, + openelis, + openfreezer Description: Debian Med suggestions for medical laboratories This metapackage contains dependencies for software and that could be useful ro run a medical laboratory. Package: med-oncology -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) Recommends: dicompyler, - orthanc-wsi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] -Suggests: uw-prism + orthanc-wsi +Suggests: planunc, + uw-prism Description: Debian Med packages for oncology This metapackage will install tools that are useful for radiation oncology. Package: med-pharmacy -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) -Recommends: chemtool [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-dosefinding [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) +Recommends: chemtool, + r-cran-dosefinding Suggests: raccoon Description: Debian Med packages for pharmaceutical research This metapackage contains dependencies for a @@ -1306,18 +1469,19 @@ Description: Debian Med packages for pharmaceutical research pharmaceutical research. Package: med-physics -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) -Recommends: biosig-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - octave [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - paw [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - paw++ [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) +Recommends: biosig-tools, + octave, + paw, + paw++, r-base -Suggests: gdf-tools, +Suggests: gate, + gdf-tools, libbiosig-dev, octave-biosig, + openvibe, paw-demos, python-biosig, python-multipletau @@ -1328,40 +1492,59 @@ Description: Debian Med packages for medical physicists and related fields. Package: med-practice -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) -Recommends: entangle [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - freediams [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - freemedforms-emr [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - ginkgocadx [!s390 !hurd-i386 !mips64el !kfreebsd-amd64 !s390x !powerpc !ppc64el !sparc !armel !armhf !ia64 !mips !kfreebsd-i386 !mipsel !arm64], +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) +Recommends: entangle, + freediams, + freemedforms-emr, + ginkgocadx, gnumed-client, gnumed-server, - libchipcard-tools [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - orthanc [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - orthanc-wsi [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - qrisk2 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-cran-medadherence [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - sleepyhead [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] -Suggests: libctapimkt1, + libchipcard-tools, + orthanc, + orthanc-wsi, + qrisk2, + r-cran-medadherence, + sleepyhead +Suggests: clearhealth, + elementalclinic, + elexis, + freeb, + freemed, + freeshim, + libctapimkt1, + medintux, + mirrormed, + mirth, openemr, - thera-pi + openpms, + openrep, + proteus, + remitt, + resmedicinae, + sqlclinic, + thera-pi, + tinyheb Description: Debian Med packages for practice management This metapackage contains dependencies for a collection of software which might be helpful for practitioners to manage their practice. Package: med-psychology -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) -Recommends: praat [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - psignifit [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) +Recommends: praat, + psignifit, psychopy, - r-cran-foreign [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + r-cran-foreign, r-cran-psy -Suggests: python-pyepl, +Suggests: miscpsycho, + psych, + psychometric, + psychotree, + psyphy, + python-pyepl, python-pypsignifit, python-visionegg, science-psychophysics @@ -1370,28 +1553,26 @@ Description: Debian Med packages for psychology which might be helpful for psychological research. Package: med-rehabilitation -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) -Recommends: sitplus [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) +Recommends: sitplus Suggests: aghermann Description: Debian Med packages for rehabilitation technologies This metapackage will install tools that are useful for rehabilitation and therapy. Package: med-statistics -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) -Recommends: r-bioc-limma [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], - r-bioc-multtest [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) +Recommends: r-bioc-limma, + r-bioc-multtest, r-bioc-qvalue, - r-cran-ade4 [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + r-cran-ade4, r-cran-beeswarm, r-cran-pvclust, - r-cran-randomforest [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] + r-cran-randomforest Suggests: rstudio, science-statistics Description: Debian Med statistics @@ -1399,25 +1580,24 @@ Description: Debian Med statistics with a special focus on tasks in medical care. Package: med-tools -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) Recommends: cronometer, - edfbrowser [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + edfbrowser, galileo, hunspell-de-med, hunspell-en-med, nutsqlite, pcalendar, pondus, - python-clips [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + python-clips, python-fitbit, - quitcount [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386], + quitcount, r-cran-fitbitscraper, r-cran-fitcoach, wgerman-medical, - workrave [!s390 !hurd-i386 !kfreebsd-amd64 !powerpc !sparc !ia64 !kfreebsd-i386] + workrave Suggests: cycle, entangle, goldencheetah, @@ -1431,10 +1611,9 @@ Description: Debian Med several tools Currently it contains some simple programs for Personal Health. Package: med-typesetting -Architecture: any -Section: metapackage -Priority: extra -Depends: med-tasks (= ${binary:Version}), med-config (= ${binary:Version}) +Section: metapackages +Architecture: all +Depends: med-tasks (= ${source:Version}), ${misc:Depends}, med-config (= ${source:Version}) Recommends: king, texlive-latex-extra, texlive-science -- Debian Med metapackages _______________________________________________ Blends-commit mailing list Blends-commit@lists.alioth.debian.org http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/blends-commit