Hi, I am an user of CDK, indeed a powerful tool. I am generating molecules images (CDK + JChemPaint) from SMILES and MOL2 files, but I'm having trouble applying stereochemistry to them (the images don't show stereochemistry). I couldn't find an example or some explanation on how to do this, so, I could use some advice about this :)
Other thing is that for bigger molecules, some bonds start to overlap, creating an unesthetical appearance that sometimes impairs the understanding of the molecule. Is there any option to avoid this on the generated image? Thanks! ------------------------------------------------------------------------------ Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ _______________________________________________ Cdk-user mailing list Cdk-user@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/cdk-user
