Hi, would you mind reporting this upstream?
Kind regards Andreas. On Fri, Jul 20, 2012 at 05:52:49PM +0900, Charles Plessy wrote: > Package: qiime > Version: 1.5.0-1 > Severity: important > > Hi all, > > it looks like /usr/lib/qiime/bin/subsample_fasta.py needs a python > library that is not in python 2.6. > > $ /usr/lib/qiime/bin/subsample_fasta.py > Traceback (most recent call last): > File "/usr/lib/qiime/bin/subsample_fasta.py", line 15, in <module> > from qiime.util import parse_command_line_parameters, get_options_lookup,\ > File "/usr/lib/python2.6/dist-packages/qiime/util.py", line 25, in <module> > from collections import defaultdict, Counter > ImportError: cannot import name Counter > > After changing its first line to '#!/usr/bin/python2.7', the error > dissapeared. > > Cheers, > > -- Charles Plessy, Tsurumi, Kanagawa, Japan. > > > > -- System Information: > Debian Release: wheezy/sid > APT prefers stable > APT policy: (910, 'stable'), (900, 'testing'), (800, 'unstable'), (500, > 'stable-updates'), (1, 'experimental') > Architecture: amd64 (x86_64) > > Kernel: Linux 3.2.0-2-amd64 (SMP w/8 CPU cores) > Locale: LANG=en_GB.utf8, LC_CTYPE=en_GB.utf8 (charmap=UTF-8) > Shell: /bin/sh linked to /bin/dash > > Versions of packages qiime depends on: > ii king 2.21.120420-2 interactive system for > three-dimen > ii libc6 2.13-21 Embedded GNU C Library: Shared > lib > ii libffi5 3.0.9-3 Foreign Function Interface > library > ii libgmp10 2:5.0.2+dfsg-1 Multiprecision arithmetic library > ii pynast [python-pynast] 1.1-3 alignment of short DNA sequences > ii python 2.6.6-14 interactive high-level > object-orie > ii python-cogent 1.5.1-2 framework for genomic biology > ii python2.6 2.6.6-8+b1 An interactive high-level > object-o > ii python2.7 2.7.3-2 Interactive high-level > object-orie > > Versions of packages qiime recommends: > ii ampliconnoise 1.25-1 Programs for the removal of > noise > ii blast2 1:2.2.21.20090809-2 Basic Local Alignment Search Tool > ii cd-hit 4.5.7-1 suite of programs designed to > quic > pn chimeraslayer <none> (no description available) > pn fasttree <none> (no description available) > ii infernal 1.0.2-1 inference of RNA secondary > structu > ii muscle 1:3.8.31-1 Multiple alignment program of > prot > ii python-matplotlib 1.1.0-1 Python based plotting system in > a > ii python-numpy 1:1.5.1-3 Numerical Python adds a fast > array > pn rdp-classifier <none> (no description available) > > Versions of packages qiime suggests: > pn cytoscape <none> (no description available) > ii t-coffee 9.02.r1228-2 Multiple Sequence Alignment > > -- no debconf information > > -- debsums errors found: > debsums: changed file /usr/lib/qiime/bin/subsample_fasta.py (from qiime > package) > > _______________________________________________ > Debian-med-packaging mailing list > debian-med-packag...@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging > -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-dist-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org