After investigating a bit further, I noticed that a common thing with the files that fail the consistency check is that their names contains multiple dots, e.g. "Fanni Joulukortti 2006.psd.gz" and "16.01.1997-15.02.1997.pdf", "something.tar.gz". The annex file contain two parts of the filename, e.g. "SHA256E-XXXX.1997.gz".
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