Package: r-bioc-annotationdbi Version: 1.24.0-1 Hello,
r-bioc-annotationdbi's autopkgtest currently fails [1]: Error in BiocGenerics:::testPackage("AnnotationDbi") : RUnit package not found After adding it (r-cran-runit), it fails because the test produces a lot of stderror. Attached debdiff fixes these, but the autopkgtest then fails with: Error in library("org.TguttataTestingSubset.eg.db") : there is no package called 'org.TguttataTestingSubset.eg.db' Loading required package: hom.Hs.inp.db Error in eval(expr, envir, enclos) : object 'hom.Hs.inp.db' not found In addition: Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called 'hom.Hs.inp.db' Loading required package: reactome.db Error in eval(expr, envir, enclos) : object 'reactome.db' not found In addition: Warning message: In library(package, lib.loc = lib.loc, character.only = TRUE, logical.return = TRUE, : there is no package called 'reactome.db' It seems these aren't packaged yet? Thanks for considering, Martin [1] https://jenkins.qa.ubuntu.com/job/trusty-adt-r-bioc-annotationdbi/1/ARCH=i386,label=adt/console -- Martin Pitt | http://www.piware.de Ubuntu Developer (www.ubuntu.com) | Debian Developer (www.debian.org)
diff -Nru r-bioc-annotationdbi-1.24.0/debian/changelog r-bioc-annotationdbi-1.24.0/debian/changelog --- r-bioc-annotationdbi-1.24.0/debian/changelog 2013-12-28 16:31:26.000000000 +0100 +++ r-bioc-annotationdbi-1.24.0/debian/changelog 2014-01-16 12:25:12.000000000 +0100 @@ -1,3 +1,10 @@ +r-bioc-annotationdbi (1.24.0-1ubuntu1) UNRELEASED; urgency=medium + + * debian/tests/control: Add missing r-cran-runit test dependency, and allow + stderr output. + + -- Martin Pitt <martin.p...@ubuntu.com> Thu, 16 Jan 2014 12:24:53 +0100 + r-bioc-annotationdbi (1.24.0-1) unstable; urgency=medium * New upstream version diff -Nru r-bioc-annotationdbi-1.24.0/debian/tests/control r-bioc-annotationdbi-1.24.0/debian/tests/control --- r-bioc-annotationdbi-1.24.0/debian/tests/control 2013-11-05 09:42:06.000000000 +0100 +++ r-bioc-annotationdbi-1.24.0/debian/tests/control 2014-01-16 12:24:51.000000000 +0100 @@ -1 +1,3 @@ Tests: run-unit-test +Depends: @, r-cran-runit +Restrictions: allow-stderr
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