Control: reopen -1 Control: tags -1 confirmed Control: tags -1 upstream Control: forwarded -1 Christopher Chang <chrch...@alumni.caltech.edu>
Hi Christopher (and Dylan), I verified the latest version (29 Jan 2022) of plink2 with the same result for the CI test we are doing in Debian (which was written by Dylan): $ plink2 --dummy 33 65537 0.1 dosage-freq=0.1 --out tmp_data PLINK v2.00a3 SSE4.2 (29 Jan 2022) www.cog-genomics.org/plink/2.0/ (C) 2005-2022 Shaun Purcell, Christopher Chang GNU General Public License v3 Logging to tmp_data.log. Options in effect: --dummy 33 65537 0.1 dosage-freq=0.1 --out tmp_data Start time: Thu Feb 17 06:34:30 2022 31998 MiB RAM detected; reserving 15999 MiB for main workspace. Using up to 4 compute threads. Dummy data (33 samples, 65537 SNPs) written to tmp_data.pgen + tmp_data.pvar + tmp_data.psam . End time: Thu Feb 17 06:34:30 2022 /usr/bin/plink2: line 8: 156 Segmentation fault "${cmd}" "$@" Please note that for the build the Debian packaged zstd and libdeflate are used. This is the same result as for the version released at 11 Oct 2021 which is currently uploaded to Debian unstable. There is a full log of the CI test available[1]. Kind regards Andreas. [1] https://ci.debian.net/data/autopkgtest/testing/amd64/p/plink2/19288881/log.gz -- http://fam-tille.de