Source: openmm
Version: 8.0.0+dfsg-6
Severity: serious
Tags: patch pending sid trixie
Justification: library ABI skew on upgrade
User: debian-...@lists.debian.org
Usertags: time-t
NOTICE: these changes must not be uploaded to unstable yet!
Dear maintainer,
As part of the 64-bit time_t transition required to support 32-bit
architectures in 2038 and beyond
(https://wiki.debian.org/ReleaseGoals/64bit-time), we have identified
openmm as a source package shipping runtime libraries whose ABI
either is affected by the change in size of time_t, or could not be
analyzed via abi-compliance-checker (and therefore to be on the safe
side we assume is affected).
To ensure that inconsistent combinations of libraries with their
reverse-dependencies are never installed together, it is necessary to
have a library transition, which is most easily done by renaming the
runtime library package.
Since turning on 64-bit time_t is being handled centrally through a change
to the default dpkg-buildflags (https://bugs.debian.org/1037136), it is
important that libraries affected by this ABI change all be uploaded close
together in time. Therefore I have prepared a 0-day NMU for openmm
which will initially be uploaded to experimental if possible, then to
unstable after packages have cleared binary NEW.
Please find the patch for this NMU attached.
If you have any concerns about this patch, please reach out ASAP. Although
this package will be uploaded to experimental immediately, there will be a
period of several days before we begin uploads to unstable; so if information
becomes available that your package should not be included in the transition,
there is time for us to amend the planned uploads.
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 6.2.0-39-generic (SMP w/32 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE,
TAINT_UNSIGNED_MODULE
Locale: LANG=C.UTF-8, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
diff -Nru openmm-8.0.0+dfsg/debian/changelog openmm-8.0.0+dfsg/debian/changelog
--- openmm-8.0.0+dfsg/debian/changelog 2023-11-29 03:41:00.000000000 -0300
+++ openmm-8.0.0+dfsg/debian/changelog 2024-02-04 23:18:01.000000000 -0300
@@ -1,3 +1,10 @@
+openmm (8.0.0+dfsg-6.1) experimental; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition.
+
+ -- Lucas Kanashiro <kanash...@debian.org> Sun, 04 Feb 2024 23:18:01 -0300
+
openmm (8.0.0+dfsg-6) unstable; urgency=medium
* Rename debian/patches/SIMDe -> debian/patches/SIMDe.patch.
diff -Nru openmm-8.0.0+dfsg/debian/control openmm-8.0.0+dfsg/debian/control
--- openmm-8.0.0+dfsg/debian/control 2023-11-24 04:25:42.000000000 -0300
+++ openmm-8.0.0+dfsg/debian/control 2024-02-04 23:18:01.000000000 -0300
@@ -31,7 +31,7 @@
Architecture: any
Section: libdevel
Depends:
- libopenmm8.0 (= ${binary:Version}),
+ libopenmm8.0t64 (= ${binary:Version}),
${misc:Depends},
${shlibs:Depends},
Description: C++ header files for the OpenMM library
@@ -49,7 +49,10 @@
of high performance computing architectures. This package provides OpenMM
plugins.
-Package: libopenmm8.0
+Package: libopenmm8.0t64
+Provides: ${t64:Provides}
+Replaces: libopenmm8.0
+Breaks: libopenmm8.0 (<< ${source:Version})
Architecture: any
Depends:
${misc:Depends},
diff -Nru openmm-8.0.0+dfsg/debian/libopenmm8.0t64.lintian-overrides
openmm-8.0.0+dfsg/debian/libopenmm8.0t64.lintian-overrides
--- openmm-8.0.0+dfsg/debian/libopenmm8.0t64.lintian-overrides 1969-12-31
21:00:00.000000000 -0300
+++ openmm-8.0.0+dfsg/debian/libopenmm8.0t64.lintian-overrides 2024-02-04
23:18:01.000000000 -0300
@@ -0,0 +1 @@
+libopenmm8.0t64: package-name-doesnt-match-sonames libopenmm8.0
diff -Nru openmm-8.0.0+dfsg/debian/rules openmm-8.0.0+dfsg/debian/rules
--- openmm-8.0.0+dfsg/debian/rules 2023-11-28 07:28:08.000000000 -0300
+++ openmm-8.0.0+dfsg/debian/rules 2024-02-04 23:18:01.000000000 -0300
@@ -42,7 +42,7 @@
override_dh_auto_install:
dh_auto_install -O--buildsystem=cmake
- dh_install -plibopenmm8.0 debian/tmp/usr/lib/libOpenMM.so.*
usr/lib/${DEB_HOST_MULTIARCH}
+ dh_install -plibopenmm8.0t64 debian/tmp/usr/lib/libOpenMM.so.*
usr/lib/${DEB_HOST_MULTIARCH}
dh_install -plibopenmm-dev debian/tmp/usr/lib/libOpenMMAmoeba.so
usr/lib/${DEB_HOST_MULTIARCH}/openmm
dh_install -plibopenmm-dev debian/tmp/usr/lib/libOpenMMDrude.so
usr/lib/${DEB_HOST_MULTIARCH}/openmm
dh_install -plibopenmm-dev debian/tmp/usr/lib/libOpenMMRPMD.so
usr/lib/${DEB_HOST_MULTIARCH}/openmm
