Source: dialign-t Version: 1.0.2-14 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20240313 ftbfs-trixie ftbfs-impfuncdef
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. This is most likely caused by a change in dpkg 1.22.6, that enabled -Werror=implicit-function-declaration. For more information, see https://wiki.debian.org/qa.debian.org/FTBFS#A2024-03-13_-Werror.3Dimplicit-function-declaration Relevant part (hopefully): > gcc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx > -c -o orf.o orf.c > alig.c:15:20: warning: inline function ‘calc_ov_weight’ declared but never > defined > 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col > *dcol, struct scr_matrix* smatrix, > | ^~~~~~~~~~~~~~ > alig.c:13:20: warning: inline function ‘calc_weight’ declared but never > defined > 13 | extern inline void calc_weight(struct diag* dg, struct scr_matrix* > smatrix, > | ^~~~~~~~~~~ > assemble.c:37:32: warning: inline function ‘find_eqc’ declared but never > defined > 37 | extern inline struct algn_pos *find_eqc(struct algn_pos **ap, int > seqnum, int pos); > | ^~~~~~~~ > museq.c: In function ‘main’: > assemble.c:25:39: warning: inline function ‘find_diags_guided’ declared but > never defined > 25 | extern inline struct simple_diag_col* find_diags_guided(struct > scr_matrix *smatrix, > | ^~~~~~~~~~~~~~~~~ > assemble.c:15:20: warning: inline function ‘calc_ov_weight’ declared but > never defined > 15 | extern inline void calc_ov_weight(struct diag* dg, struct diag_col > *dcol, struct scr_matrix* smatrix, > | ^~~~~~~~~~~~~~ > museq.c:168:9: error: implicit declaration of function ‘free_diag’; did you > mean ‘free_diag_col’? [-Werror=implicit-function-declaration] > 168 | free_diag(adcol.diags[i]); > | ^~~~~~~~~ > | free_diag_col > io.c: In function ‘read_anchors’: > museq.c:278:27: error: implicit declaration of function ‘free_alignment’ > [-Werror=implicit-function-declaration] > 278 | if(! para->FAST_MODE) free_alignment(algn); > | ^~~~~~~~~~~~~~ > io.c:535:23: warning: format ‘%li’ expects argument of type ‘long int *’, but > argument 3 has type ‘int *’ [-Wformat=] > 535 | while( fscanf(fp,"%li %li %li %li %li > %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { > | ~~^ ~~~ > | | | > | long int * int * > | %i > io.c:535:27: warning: format ‘%li’ expects argument of type ‘long int *’, but > argument 4 has type ‘int *’ [-Wformat=] > 535 | while( fscanf(fp,"%li %li %li %li %li > %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { > | ~~^ ~~~ > | | | > | long int * int * > | %i > io.c:535:31: warning: format ‘%li’ expects argument of type ‘long int *’, but > argument 5 has type ‘int *’ [-Wformat=] > 535 | while( fscanf(fp,"%li %li %li %li %li > %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { > | ~~^ ~~~~ > | | | > | long int * int * > | %i > io.c:535:35: warning: format ‘%li’ expects argument of type ‘long int *’, but > argument 6 has type ‘int *’ [-Wformat=] > 535 | while( fscanf(fp,"%li %li %li %li %li > %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { > | ~~^ ~~~~ > | | | > | long int * int * > | %i > io.c:535:39: warning: format ‘%li’ expects argument of type ‘long int *’, but > argument 7 has type ‘int *’ [-Wformat=] > 535 | while( fscanf(fp,"%li %li %li %li %li > %le\n",&s1,&s2,&sp1,&sp2,&len,&score ) == 6) { > | ~~^ ~~~~ > | | | > | long int * int * > | %i > diag.c:1456:17: warning: ‘real_calc_weight’ is static but used in inline > function ‘find_diags_dyn’ which is not static > 1456 | real_calc_weight(dg, smatrix, pdist,1,tmp_dist,algn); > | ^~~~~~~~~~~~~~~~ > io.c: In function ‘read_scr_matrix’: > io.c:270:17: warning: ignoring return value of ‘fscanf’ declared with > attribute ‘warn_unused_result’ [-Wunused-result] > 270 | fscanf( fp, "%i", &is); > | ^~~~~~~~~~~~~~~~~~~~~~ > io.c:282:5: warning: ignoring return value of ‘fscanf’ declared with > attribute ‘warn_unused_result’ [-Wunused-result] > 282 | fscanf(fp, "%s\n", rline); > | ^~~~~~~~~~~~~~~~~~~~~~~~~ > io.c: In function ‘read_diag_prob_dist’: > io.c:371:7: warning: ignoring return value of ‘fscanf’ declared with > attribute ‘warn_unused_result’ [-Wunused-result] > 371 | fscanf( fp, "%li %li %Le\n", &ti,&tscr,&weight ); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ > gcc -g -O2 -Werror=implicit-function-declaration > -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong > -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection > -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -mfpmath=sse -msse -mmmx > -c -o translate.o translate.c > cc1: some warnings being treated as errors > make[1]: *** [<builtin>: museq.o] Error 1 The full build log is available from: http://qa-logs.debian.net/2024/03/13/dialign-t_1.0.2-14_unstable.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240313;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240313&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
