Package: graphviz Version: 2.8-2.3 Severity: important To the R/BioConductor package interfacing graphviz, its configure relies on querying pkg-config. But witness:
[EMAIL PROTECTED]:~> pkg-config --libs graphviz Package graphviz was not found in the pkg-config search path. Perhaps you should add the directory containing `graphviz.pc' to the PKG_CONFIG_PATH environment variable That makes it pretty useless as a library provides, as the install from R falls flat on its face: > update.packages(lib.loc="/usr/local/lib/R/site-library") Rgraphviz : Version 1.5.0 installed in /usr/local/lib/R/site-library Version 1.12.1 available at http://www.bioconductor.org Update (y/N/c)? y trying URL 'http://www.bioconductor.org/src/contrib/Rgraphviz_1.12.1.tar.gz' Content type 'application/x-gzip' length 1504650 bytes opened URL ================================================== downloaded 1469Kb * Installing *source* package 'Rgraphviz' ... checking for pkg-config... /usr/bin/pkg-config Package libgvc was not found in the pkg-config search path. Perhaps you should add the directory containing `libgvc.pc' to the PKG_CONFIG_PATH environment variable No package 'libgvc' found configure: pkg-config was not able to find graphviz. Verify graphviz is installed and that PKG_CONFIG_PATH is correct. checking for dotneato-config... no configure: dotneato-config not found in PATH. Try specifying location of graphviz using --with-graphviz configure: error: graphviz was not found. ERROR: configuration failed for package 'Rgraphviz' ** Removing '/usr/local/lib/R/site-library/Rgraphviz' ** Restoring previous '/usr/local/lib/R/site-library/Rgraphviz' And libgvc is installed by graphviz so this is really too bad. Dirk -- System Information: Debian Release: testing/unstable APT prefers testing-proposed-updates APT policy: (500, 'testing-proposed-updates'), (500, 'testing') Architecture: i386 (i686) Shell: /bin/sh linked to /bin/bash Kernel: Linux 2.6.15-1-k7-smp Locale: LANG=C, LC_CTYPE=C (charmap=ANSI_X3.4-1968) Versions of packages graphviz depends on: ii libc6 2.3.6.ds1-4 GNU C Library: Shared libraries ii libexpat1 1.95.8-3.3 XML parsing C library - runtime li ii libfontconfig1 2.4.1-2 generic font configuration library ii libfreetype6 2.2.1-5 FreeType 2 font engine, shared lib ii libgcc1 1:4.1.1-13 GCC support library ii libice6 1:1.0.1-2 X11 Inter-Client Exchange library ii libjpeg62 6b-13 The Independent JPEG Group's JPEG ii libltdl3 1.5.22-4 A system independent dlopen wrappe ii libperl5.8 5.8.8-6.1 Shared Perl library ii libpng12-0 1.2.8rel-5.2 PNG library - runtime ii libsm6 1:1.0.1-3 X11 Session Management library ii libstdc++6 4.1.1-13 The GNU Standard C++ Library v3 ii libx11-6 2:1.0.0-9 X11 client-side library ii libxaw7 1:1.0.2-4 X11 Athena Widget library ii libxext6 1:1.0.1-2 X11 miscellaneous extension librar ii libxmu6 1:1.0.2-2 X11 miscellaneous utility library ii libxpm4 1:3.5.5-2 X11 pixmap library ii libxt6 1:1.0.2-2 X11 toolkit intrinsics library ii tk8.4 8.4.12-1 Tk toolkit for Tcl and X11, v8.4 - ii zlib1g 1:1.2.3-13 compression library - runtime graphviz recommends no packages. -- no debconf information -- Hell, there are no rules here - we're trying to accomplish something. -- Thomas A. Edison -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
