I had the exact same trouble when upgrading from Sarge to Etch. But just on one system. Nobody seemed to be able to help so I tried a desperate thing and reinstalled the installed packages:
for pkg in `dpkg -l | grep ^i | awk '{print $2}'` ; do aptitude \
reinstall $pkg ; done
After that the problem was gone here. Can't tell more about the actual
cause.
Christoph
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