Your message dated Tue, 23 Feb 2021 18:33:43 +0000 with message-id <e1lecvd-000iuw...@fasolo.debian.org> and subject line Bug#978316: fixed in libbio-db-embl-perl 1.7.4-4 has caused the Debian Bug report #978316, regarding libbio-db-embl-perl: FTBFS: dh_auto_test: error: make -j4 test TEST_VERBOSE=1 returned exit code 2 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 978316: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=978316 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: libbio-db-embl-perl Version: 1.7.4-2 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20201226 ftbfs-bullseye Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" > "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', > 'blib/arch')" t/*.t > t/00-compile.t ........... > 1..1 > ok 1 - Bio/DB/EMBL.pm loaded ok > ok > t/author-mojibake.t ...... skipped: these tests are for testing by the author > t/author-pod-coverage.t .. skipped: these tests are for testing by the author > t/author-pod-syntax.t .... skipped: these tests are for testing by the author > > ------------- EXCEPTION ------------- > MSG: EMBL stream with no ID. Not embl in my book > STACK Bio::SeqIO::embl::next_seq /usr/share/perl5/Bio/SeqIO/embl.pm:205 > STACK Bio::DB::WebDBSeqI::get_Seq_by_acc > /usr/share/perl5/Bio/DB/WebDBSeqI.pm:202 > STACK toplevel t/EMBL.t:27 > ------------------------------------- > > # Looks like your test exited with 255 just after 2. > t/EMBL.t ................. > 1..16 > ok 1 - use Bio::DB::EMBL; > ok 2 > Dubious, test returned 255 (wstat 65280, 0xff00) > Failed 14/16 subtests > > Test Summary Report > ------------------- > t/EMBL.t (Wstat: 65280 Tests: 2 Failed: 0) > Non-zero exit status: 255 > Parse errors: Bad plan. You planned 16 tests but ran 2. > Files=5, Tests=3, 1 wallclock secs ( 0.02 usr 0.00 sys + 0.29 cusr 0.02 > csys = 0.33 CPU) > Result: FAIL > Failed 1/5 test programs. 0/3 subtests failed. > make[1]: *** [Makefile:853: test_dynamic] Error 255 > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_auto_test: error: make -j4 test TEST_VERBOSE=1 returned exit code 2 The full build log is available from: http://qa-logs.debian.net/2020/12/26/libbio-db-embl-perl_1.7.4-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please marking it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with me so that we can identify if something relevant changed in the meantime. About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: libbio-db-embl-perl Source-Version: 1.7.4-4 Done: Étienne Mollier <etienne.moll...@mailoo.org> We believe that the bug you reported is fixed in the latest version of libbio-db-embl-perl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 978...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Étienne Mollier <etienne.moll...@mailoo.org> (supplier of updated libbio-db-embl-perl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 23 Feb 2021 18:22:06 +0100 Source: libbio-db-embl-perl Architecture: source Version: 1.7.4-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Étienne Mollier <etienne.moll...@mailoo.org> Closes: 978316 Changes: libbio-db-embl-perl (1.7.4-4) unstable; urgency=medium . * Team upload. * d/rules: make sure tests remain offline Closes: #978316 * explicit offline autodep8 perl autopkgtest; this is required to mark the smoke test as "superficial", since there are no offline tests done by this autopkgtest. Checksums-Sha1: 43767ab9d8d15c0a0b7784fea9a132d9d43dfef2 2243 libbio-db-embl-perl_1.7.4-4.dsc 68817783b5b1f19c004b2e197b45cbb1dae5511d 3252 libbio-db-embl-perl_1.7.4-4.debian.tar.xz 77ef0ac0d299d5e1430c4b3715d2b7c799a42b72 6776 libbio-db-embl-perl_1.7.4-4_amd64.buildinfo Checksums-Sha256: 4e9959b189b409ac9ef8ec0cb0af40193ebcce1a9e52c3ada5a91749b9bc6d56 2243 libbio-db-embl-perl_1.7.4-4.dsc 16ac9a4400393ef7fc0b2dc1ffccf721b904b1a1b2c203af61cf7c56cbf5a25e 3252 libbio-db-embl-perl_1.7.4-4.debian.tar.xz e2aa8ba5afcd7812b054d8460594c17a0675e28de53cbc096a623b6664a844aa 6776 libbio-db-embl-perl_1.7.4-4_amd64.buildinfo Files: c7d6909595b4e5f20679cb891b5c2804 2243 perl optional libbio-db-embl-perl_1.7.4-4.dsc 67e25125e39622e94b460f1d273a17b9 3252 perl optional libbio-db-embl-perl_1.7.4-4.debian.tar.xz 13425e2ec0749ad6402d9990c33059f4 6776 perl optional libbio-db-embl-perl_1.7.4-4_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmA1O0sACgkQeTz2fo8N Edo54g/+I2BeB+85WDVL3RBolb/ue2X/jeW4midprb6WXLJZIva77tu15HqFq+Rj RmHYv+XyfcbB3X8qdbtmVYOpSF1trRVNgIqqpmX1WBXh5LX4p/uIoTgUs1CYQVPB 1AWZPsQJlHz8DTB7TamlnzTFEkA1c6CyAI4HrFGL9CRJ33WxAoFiUvnba3UlG/Li jNaSWItcErZhUbaTXCz1jaP78rqCzYRB6zuRiHspphuOgzKn5vI70DYBdtCH6U2y 4I5/vhTVm69GcKplc96KjdkuHFkR+OCBRJoobbB7pEOE/ImooBma1Jk8QjSy7+oF 4ZlRZaQGGUfoG1pjrd0Mc9JiQeYiHFo0l71EMrcHVaigD0HYHl/VCJDAF+Ysjzxa a3kEEpzRxVJdzwPdwvCitCNtKIHbOxAk071pF+nzmNGRKi3v9iL30XiNE5udaZSH mMC+ysaBIDmAEA7cDlicWMsMaxA/rRcl+gza2xL5fyhY10pGLTT1iBG5/WHO9Pqv TBD4Hb3hF5prpM4cXintcmmvT8ByKMM2cIMv1yG9DE+YiD2vDliAtXiSnTccgu9S AgvqB1b21IXPPVwSRaYL9Hd3P6ggt+Ymnev+TvsqMXnbZDBkFDiIrSCuPjrdETQp /S4OQjLvbGn/1Gbk9G0ZKOKdEY85GN40Gf1tfueuKTQD4HXqd28= =wvap -----END PGP SIGNATURE-----
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