Your message dated Thu, 06 May 2021 09:03:38 +0000
with message-id <e1lezv0-000f0p...@fasolo.debian.org>
and subject line Bug#976952: fixed in lmfit-py 1.0.1-6
has caused the Debian Bug report #976952,
regarding lmfit-py: FTBFS on ppc64el (arch:all-only src pkg): dh_auto_test:
error: pybuild --test --test-pytest -i python{version} -p 3.9 returned exit
code 13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
976952: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=976952
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: lmfit-py
Version: 1.0.1-3
Severity: serious
Justification: FTBFS on ppc64el
Tags: bullseye sid ftbfs
Usertags: ftbfs-20201209 ftbfs-bullseye ftbfs-ppc64el
Hi,
During a rebuild of all packages in sid, your package failed to build
on ppc64el. At the same time, it did not fail on amd64.
I'm marking this bug as severity:serious since your package has only
Architecture:all binary packages, and should thus, in theory, build
everywhere. Failure to build on ppc64el might indicate a serious issue
in this package or in another package.
But feel free to downgrade or close if you believe that this is only a
build-time issue. (I would personnally prefer a severity:minor bug just to
track that the package can only be built on specific architectures.)
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> dh_auto_test
> pybuild --test --test-pytest -i python{version} -p 3.9
> I: pybuild pybuild:284: cp -r NIST_STRD examples
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_lmfit/build
> I: pybuild base:232: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_lmfit/build;
> python3.9 -m pytest tests
> ============================= test session starts
> ==============================
> platform linux -- Python 3.9.1, pytest-4.6.11, py-1.9.0, pluggy-0.13.0
> rootdir: /<<PKGBUILDDIR>>
> collected 525 items
>
> tests/test_1variable.py . [
> 0%]
> tests/test_NIST_Strd.py ........................... [
> 5%]
> tests/test_algebraic_constraint.py .... [
> 6%]
> tests/test_ampgo.py ............ [
> 8%]
> tests/test_basicfit.py . [
> 8%]
> tests/test_basinhopping.py ..... [
> 9%]
> tests/test_bounded_jacobian.py . [
> 9%]
> tests/test_bounds.py . [
> 9%]
> tests/test_brute.py ............ [
> 12%]
> tests/test_builtin_models.py ..... [
> 13%]
> tests/test_confidence.py ............. [
> 15%]
> tests/test_covariance_matrix.py ..ssssssss [
> 17%]
> tests/test_custom_independentvar.py . [
> 17%]
> tests/test_default_kws.py . [
> 17%]
> tests/test_dual_annealing.py ... [
> 18%]
> tests/test_itercb.py ....... [
> 19%]
> tests/test_jsonutils.py ................ [
> 22%]
> tests/test_least_squares.py ..... [
> 23%]
> tests/test_lineshapes.py ............................................... [
> 32%]
> ........................ [
> 37%]
> tests/test_manypeaks_speed.py . [
> 37%]
> tests/test_max_nfev.py ...x.................x.x... [
> 42%]
> tests/test_minimizer.py . [
> 42%]
> tests/test_model.py ...................F................................ [
> 52%]
> ........................s....s.......................................... [
> 66%]
> [
> 66%]
> tests/test_model_uncertainties.py .... [
> 67%]
> tests/test_multidatasets.py . [
> 67%]
> tests/test_nose.py ...............s........ [
> 72%]
> tests/test_pandas.py . [
> 72%]
> tests/test_parameter.py ................................................ [
> 81%]
> .......... [
> 83%]
> tests/test_parameters.py ............................ [
> 88%]
> tests/test_printfuncs.py ................................. [
> 94%]
> tests/test_saveload.py .s.s.............. [
> 98%]
> tests/test_shgo.py ....... [
> 99%]
> tests/test_stepmodel.py ..
> [100%]
>
> =================================== FAILURES
> ===================================
> _________________ TestUserDefiniedModel.test_model_nan_policy
> __________________
>
> self = <test_model.TestUserDefiniedModel testMethod=test_model_nan_policy>
>
> def test_model_nan_policy(self):
> """Tests for nan_policy with NaN values in the input data."""
> x = np.linspace(0, 10, 201)
> np.random.seed(0)
> y = gaussian(x, 10.0, 6.15, 0.8)
> y += gaussian(x, 8.0, 6.35, 1.1)
> y += gaussian(x, 0.25, 6.00, 7.5)
> y += np.random.normal(size=len(x), scale=0.5)
>
> # with NaN values in the input data
> y[55] = y[91] = np.nan
> mod = PseudoVoigtModel()
> params = mod.make_params(amplitude=20, center=5.5,
> sigma=1, fraction=0.25)
> params['fraction'].vary = False
>
> # with raise, should get a ValueError
> result = lambda: mod.fit(y, params, x=x, nan_policy='raise')
> msg = ('NaN values detected in your input data or the output of your '
> 'objective/model function - fitting algorithms cannot handle
> this!')
> self.assertRaisesRegex(ValueError, msg, result)
>
> # with propagate, should get no error, but bad results
> result = mod.fit(y, params, x=x, nan_policy='propagate')
> > self.assertTrue(result.success)
> E AssertionError: False is not true
>
> tests/test_model.py:647: AssertionError
> =============================== warnings summary
> ===============================
> .pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_no_ZeroDivisionError_and_finite_output[logistic]
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_lmfit/build/lmfit/lineshapes.py:184:
> RuntimeWarning: overflow encountered in exp
> return amplitude*(1. - 1./(1. + exp((x-center)/max(tiny, sigma))))
>
> .pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_no_ZeroDivisionError_and_finite_output[thermal_distribution]
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_lmfit/build/lmfit/lineshapes.py:344:
> RuntimeWarning: divide by zero encountered in true_divide
> return real(1/(amplitude*exp((x - center)/kt) + offset + tiny*1j))
>
> .pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_x_float_value[step]
> .pybuild/cpython3_3.9_lmfit/build/tests/test_lineshapes.py::test_x_float_value[rectangle]
> <__array_function__ internals>:5: DeprecationWarning: Calling nonzero on 0d
> arrays is deprecated, as it behaves surprisingly. Use
> `atleast_1d(cond).nonzero()` if the old behavior was intended. If the context
> of this warning is of the form `arr[nonzero(cond)]`, just use `arr[cond]`.
>
> .pybuild/cpython3_3.9_lmfit/build/tests/test_nose.py::CommonMinimizerTest::test_diffev_bounds_check
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_lmfit/build/lmfit/minimizer.py:933:
> RuntimeWarning: ignoring `maxiter` argument to `scalar_minimize()`. Use
> `max_nfev` instead.
> warnings.warn(MAXEVAL_Warning % ('maxiter', thisfuncname()),
>
> -- Docs: https://docs.pytest.org/en/latest/warnings.html
> === 1 failed, 508 passed, 13 skipped, 3 xfailed, 5 warnings in 98.68 seconds
> ===
> E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_lmfit/build; python3.9 -m pytest tests
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9
> returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2020/12/09/lmfit-py_1.0.1-3_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with me
so that we can identify if something relevant changed in the meantime.
About the archive rebuild: The rebuild was done on a Power8 cluster part of the
Grid'5000 testbed. Hardware specs:
https://www.grid5000.fr/w/Grenoble:Hardware#drac
--- End Message ---
--- Begin Message ---
Source: lmfit-py
Source-Version: 1.0.1-6
Done: Graham Inggs <gin...@debian.org>
We believe that the bug you reported is fixed in the latest version of
lmfit-py, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 976...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Graham Inggs <gin...@debian.org> (supplier of updated lmfit-py package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 06 May 2021 08:32:40 +0000
Source: lmfit-py
Architecture: source
Version: 1.0.1-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Graham Inggs <gin...@debian.org>
Closes: 976952
Changes:
lmfit-py (1.0.1-6) unstable; urgency=medium
.
* Team upload
.
[ Picca Frédéric-Emmanuel ]
* Acknowledge Ole Streicher for fixing #987459
.
[ Graham Inggs ]
* Skip test_model_nan_policy and test_manypeaks_speed (Closes: #976952)
Checksums-Sha1:
90c5de59a32972dd5557238824542fbc86f84f2e 2458 lmfit-py_1.0.1-6.dsc
c1ed9205ce459eb3dc49b4b0bb8edb7fd7cbea6f 7912 lmfit-py_1.0.1-6.debian.tar.xz
Checksums-Sha256:
0c73fb27beae1c489228d07f9fc300df5fc1656b24a80db96ef7cc754420a38d 2458
lmfit-py_1.0.1-6.dsc
0bd76a686e90c9a892a6711427b2125e1a2d3a7c30db2f1fdc0129a2afc78042 7912
lmfit-py_1.0.1-6.debian.tar.xz
Files:
e8d8009e0bdbc46fd6a0efebdf614658 2458 science optional lmfit-py_1.0.1-6.dsc
dfb61677de85ed4260e1321e04d0d537 7912 science optional
lmfit-py_1.0.1-6.debian.tar.xz
-----BEGIN PGP SIGNATURE-----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=zdP3
-----END PGP SIGNATURE-----
--- End Message ---
