Your message dated Fri, 21 Jul 2023 16:20:37 +0000
with message-id <e1qmsrt-00hwtt...@fasolo.debian.org>
and subject line Bug#1033853: fixed in r-bioc-megadepth 1.10.0+ds-1
has caused the Debian Bug report #1033853,
regarding r-bioc-megadepth: autopkgtest regression: different output
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1033853: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1033853
Debian Bug Tracking System
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--- Begin Message ---
Source: r-bioc-megadepth
Version: 1.8.0+ds-1
Severity: serious
Control: tags -1 bookworm-ignore
User: debian...@lists.debian.org
Usertags: regression
Dear maintainer(s),
Your package has an autopkgtest, great. However, it fails in testing
since March 2023. Can you please investigate the situation and fix it? I
copied some of the output at the bottom of this report.
The release team has announced [1] that failing autopkgtest on amd64 and
arm64 are considered RC in testing. [Release Team member hat on] Because
we're currently in the hard freeze for bookworm, I have marked this bug
as bookworm-ignore. Targeted fixes are still welcome.
More information about this bug and the reason for filing it can be
found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://lists.debian.org/debian-devel-announce/2019/07/msg00002.html
https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-megadepth/32560589/log.gz
══ Failed tests
════════════════════════════════════════════════════════════════
── Failure ('test-megadepth_main_tests.R:74'): test bigwig2mean on
remote bw ───
readLines(file.path(tempdir(), "bw2.remote.mean.annotation.tsv"))
(`actual`) not equal to
readLines("https://raw.githubusercontent.com/ChristopherWilks/megadepth/master/tests/testbw2.bed.mean";)
(`expected`).
actual | expected
- "chr10\t0\t10\t0.00" [1]
- "chr10\t8756697\t8756762\t15.85" [2]
- "chr10\t4359156\t4359188\t3.00" [3]
- "GL000219.1\t168500\t168620\t1.26" [4]
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 129 ]
OpenPGP_signature
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--- End Message ---
--- Begin Message ---
Source: r-bioc-megadepth
Source-Version: 1.10.0+ds-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
r-bioc-megadepth, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1033...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated r-bioc-megadepth package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 21 Jul 2023 17:57:52 +0200
Source: r-bioc-megadepth
Architecture: source
Version: 1.10.0+ds-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 1033853
Changes:
r-bioc-megadepth (1.10.0+ds-1) unstable; urgency=medium
.
* Team upload.
* Rebuild against latest r-base
Closes: #1033853
* Standards-Version: 4.6.2 (routine-update)
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