Your message dated Wed, 24 Apr 2024 09:21:13 +0000 with message-id <e1rzyot-00dw1j...@fasolo.debian.org> and subject line Bug#1069352: fixed in r-cran-seuratobject 5.0.1-2 has caused the Debian Bug report #1069352, regarding r-cran-seuratobject: FTBFS on arm64: dpkg-gencontrol: error: parsing package 'r-cran-seuratobject' Depends field: r-api-4.0, r-base-core (>= ii r-base-core 4.3.3-3+b1 arm64 GNU R core of statistical computation and graphics system) , , r-cran-sp (>= 1.5.0), r-cran-future, r-cran-future.apply, r-cran-matrix (>= 1.6-5-1), r-cran-progressr, r-cran-rcpp (>= 1.0.5), r-cran-rlang (>= 0.4.7), r-cran-spam, r-cran-lifecycle, r-cran-generics, r-cran-rcpp, r-cran-rcppeigen, to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1069352: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1069352 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: r-cran-seuratobject Version: 5.0.1-1 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu...@debian.org Usertags: ftbfs-20240420 ftbfs-trixie ftbfs-t64-arm64 Hi, During a rebuild of all packages in sid, your package failed to build on arm64. Relevant part (hopefully): > make[1]: Entering directory '/<<PKGBUILDDIR>>' > rmbversion=`dpkg -l r-cran-matrix | grep 'ii' | sed > 's/^.*r-cran-matrix[[:space:]]\+\([0-9.-]\+\)[[:space:]]\+.*/\1/'`; \ > sed -i "s/r-cran-matrix[^,]*/r-cran-matrix (>= ${rmbversion})/" > debian/*substvars > rversion=`dpkg -l r-base-core | grep 'ii' | sed > 's/^.*r-base-core[[:space:]]\+\([0-9.-]\+\)-[0-9]\+[[:space:]]\+.*/\1/'`; \ > sed -i "s/\(r-api-[0-9.]\+\),/& r-base-core (>= ${rversion})/" > debian/*substvars > dh_gencontrol > dpkg-gencontrol: warning: can't parse dependency r-base-core (>= ii > r-base-core 4.3.3-3+b1 arm64 GNU R core of statistical > computation and graphics system) > dpkg-gencontrol: error: parsing package 'r-cran-seuratobject' Depends field: > r-api-4.0, r-base-core (>= ii r-base-core 4.3.3-3+b1 arm64 GNU R > core of statistical computation and graphics system) , , r-cran-sp (>= > 1.5.0), r-cran-future, r-cran-future.apply, r-cran-matrix (>= 1.6-5-1), > r-cran-progressr, r-cran-rcpp (>= 1.0.5), r-cran-rlang (>= 0.4.7), > r-cran-spam, r-cran-lifecycle, r-cran-generics, r-cran-rcpp, r-cran-rcppeigen, > libc6 (>= 2.17), libgcc-s1 (>= 3.0), libstdc++6 (>= 13.1), > > dh_gencontrol: error: dh_gencontrol: error: dpkg-gencontrol > -pr-cran-seuratobject -ldebian/changelog > -Tdebian/r-cran-seuratobject.substvars -cdebian/control > -Pdebian/.debhelper/r-cran-seuratobject/dbgsym-root -UPre-Depends > -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts > -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols > -UProtected -UBuilt-Using -UStatic-Built-Using > -DPackage=r-cran-seuratobject-dbgsym "-DDepends=r-cran-seuratobject (= > \${binary:Version})" "-DDescription=debug symbols for r-cran-seuratobject" > -DBuild-Ids=4f1c07f630f9d500c3cba6813ed40318efbe3d1c -DSection=debug > -UMulti-Arch -UReplaces -UBreaks returned exit code 25 > > dh_gencontrol: error: Aborting due to earlier error > make[1]: *** [debian/rules:9: override_dh_gencontrol] Error 25 The full build log is available from: http://qa-logs.debian.net/2024/04/20/r-cran-seuratobject_5.0.1-1_unstable-arm64.log All bugs filed during this archive rebuild are listed at: https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20240420;users=lu...@debian.org or: https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20240420&fusertaguser=lu...@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime.
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--- Begin Message ---Source: r-cran-seuratobject Source-Version: 5.0.1-2 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of r-cran-seuratobject, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1069...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated r-cran-seuratobject package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Wed, 24 Apr 2024 10:35:09 +0200 Source: r-cran-seuratobject Architecture: source Version: 5.0.1-2 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net> Changed-By: Andreas Tille <ti...@debian.org> Closes: 1069352 Changes: r-cran-seuratobject (5.0.1-2) unstable; urgency=medium . * Fix regexp to detect r-base-core version in case of binary only NMUs Closes: #1069352 * Standards-Version: 4.7.0 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: e00e626a908a08797cba69b2f41671cee3f06c4b 2297 r-cran-seuratobject_5.0.1-2.dsc 609119916af08dd7764058d82e6ff549c1bcc3f9 3124 r-cran-seuratobject_5.0.1-2.debian.tar.xz b1305a18dd94c61129fba480976ab18766131f86 12048 r-cran-seuratobject_5.0.1-2_amd64.buildinfo Checksums-Sha256: be84d73e796caf6618bb061732079a538a9bc2b82d2d10c17d45f37949ac82a4 2297 r-cran-seuratobject_5.0.1-2.dsc dc6e6115f1f219ab71a224a5d833a0214e428e48bea44812966e721d04f1f972 3124 r-cran-seuratobject_5.0.1-2.debian.tar.xz a34d1f993d9e8c5da7f7d249e7b0ee78654e482fcca7a00d50a1cd9e55abe5e8 12048 r-cran-seuratobject_5.0.1-2_amd64.buildinfo Files: 9d294f8411541c48e40b82027c507d5c 2297 gnu-r optional r-cran-seuratobject_5.0.1-2.dsc 1cb15607767c2d91dcf779f6dd9016b7 3124 gnu-r optional r-cran-seuratobject_5.0.1-2.debian.tar.xz 4b4a056a5f99f6d017cd08a27c19ffe3 12048 gnu-r optional r-cran-seuratobject_5.0.1-2_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmYoyvgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGsuRAAjkm0x614N/eE1qv8VBRofiBlNcNCq0q+ 3hTsKROP0BnwzWxfMUbGYAvLxhpfvmml+ZjbofbrKy90pTcike7ohKzyk9GGkrO7 SwTbP6WGDQlGfwDtT+L7jD+VrR/WKwgr+H+bGFkSjZWeGd7po30a9iN69a6gRm6h uWYh4OoH9SXWihFSC6Irm6eTsZcYZ/fnt2aQzWQgBKcMuBLrRVxmQZ6jm5KesJmM 01Dv4UsmSh0M01bp7Dwgu/smDcQ7xE7gcjzjBmYy3DtNixdUvth5oMMOFs9phPWk unrGK5T1tIsOk8bGdW0g7IHL397R2OlgxuOk/fea2nM9HKTj/ZT4qijSU73yogjf pLzPq7Fw9+WFaBsTRwfd6wIdvkKRJmSUky547bF1DcDPL0y/R3B9ighenjXfuZNl TsntBCV1eyhwQJ38hofhvLPZozzhZlVx8XQLJW61jOGWtrKT51/VRB8LuzT4Yeyy gOVSNvyy/2GxJk+shEd0NSZrI79jWdxKg/598f4udm5f9jSiDrCHPr9w+4bWY+li cM/7wAjY7Och7+HOOvi/7vF1KPHhDGIS/n+gOMpSfCUdu8lNNWz69Ps1sU9wqvDc Dt/FXUN4C6KlaZ9lp/KmuOzFSzaAeIrGk+51wcXEnqPGNqxFLCMdcKXifZKlCvOX KDrj3N8Zcms= =kbl5 -----END PGP SIGNATURE-----
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