Your message dated Sun, 12 May 2024 19:47:31 +0000 with message-id <e1s6far-000ywf...@fasolo.debian.org> and subject line Bug#1070757: fixed in bart-cuda 0.6.00-1+deb11u1 has caused the Debian Bug report #1070757, regarding bart-cuda: FTBFS in bullseye: failing tests to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 1070757: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1070757 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: src:bart-cuda Version: 0.6.00-1 Severity: serious Tags: ftbfs patch Control: fixed -1 0.8.00-2 Control: owner -1 sanv...@debian.org Dear maintainer: During a rebuild of all packages in bullseye, your package failed to build: -------------------------------------------------------------------------------- [...] debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j2 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<<PKGBUILDDIR>>' make MAKESTAGE=2 make[2]: Entering directory '/<<PKGBUILDDIR>>' make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. gcc -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MF /<<PKGBUILDDIR>>/src/.bart.d -iquote /<<PKGBUILDDIR>>/src/ -DUSE_CUDA -I/usr//include -I/usr//include/ -I/usr//include -DFFTWTHREADS -DMAIN_LIST="avg, bench, bin, bitmask, cabs, caldir, calmat, carg, casorati, cc, ccapply, cdf97, circshift, conj, conv, copy, cpyphs, creal, crop, delta, ecalib, ecaltwo, estdelay, estdims, estshift, estvar, extract, fakeksp, fft, fftmod, fftrot, fftshift, filter, flatten, flip, fmac, homodyne, index, invert, itsense, join, looklocker, lrmatrix, mandelbrot, mip, moba, nlinv, noise, normalize, nrmse, nufft, ones, pattern, phantom, pics, pocsense, poisson, poly, repmat, reshape, resize, rmfreq, rof, rss, rtnlinv, sake, saxpy, scale, sdot, show, slice, spow, sqpics, squeeze, ssa, std, svd, tgv, threshold, toimg, traj, transpose, twixread, upat, var, vec, version, walsh, wave, wavelet, wavepsf, whiten, window, wshfl, zeros, zexp, ()" -include src/main.h -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu11 -fopenmp -c -o /<<PKGBUILDDIR>>/src/bart.o /<<PKGBUILDDIR>>/src/bart.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MF src/.show.d -iquote /<<PKGBUILDDIR>>/src/ -DUSE_CUDA -I/usr//include -I/usr//include/ -I/usr//include -DFFTWTHREADS -DMAIN_LIST="avg, bench, bin, bitmask, cabs, caldir, calmat, carg, casorati, cc, ccapply, cdf97, circshift, conj, conv, copy, cpyphs, creal, crop, delta, ecalib, ecaltwo, estdelay, estdims, estshift, estvar, extract, fakeksp, fft, fftmod, fftrot, fftshift, filter, flatten, flip, fmac, homodyne, index, invert, itsense, join, looklocker, lrmatrix, mandelbrot, mip, moba, nlinv, noise, normalize, nrmse, nufft, ones, pattern, phantom, pics, pocsense, poisson, poly, repmat, reshape, resize, rmfreq, rof, rss, rtnlinv, sake, saxpy, scale, sdot, show, slice, spow, sqpics, squeeze, ssa, std, svd, tgv, threshold, toimg, traj, transpose, twixread, upat, var, vec, version, walsh, wave, wavelet, wavepsf, whiten, window, wshfl, zeros, zexp, ()" -include src/main.h -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu11 -fopenmp -c -o src/show.o src/show.c ./ar_lock.sh rsU lib/libbox.a src/show.o ar: creating lib/libbox.a gcc -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MF src/.slice.d -iquote /<<PKGBUILDDIR>>/src/ -DUSE_CUDA -I/usr//include -I/usr//include/ -I/usr//include -DFFTWTHREADS -DMAIN_LIST="avg, bench, bin, bitmask, cabs, caldir, calmat, carg, casorati, cc, ccapply, cdf97, circshift, conj, conv, copy, cpyphs, creal, crop, delta, ecalib, ecaltwo, estdelay, estdims, estshift, estvar, extract, fakeksp, fft, fftmod, fftrot, fftshift, filter, flatten, flip, fmac, homodyne, index, invert, itsense, join, looklocker, lrmatrix, mandelbrot, mip, moba, nlinv, noise, normalize, nrmse, nufft, ones, pattern, phantom, pics, pocsense, poisson, poly, repmat, reshape, resize, rmfreq, rof, rss, rtnlinv, sake, saxpy, scale, sdot, show, slice, spow, sqpics, squeeze, ssa, std, svd, tgv, threshold, toimg, traj, transpose, twixread, upat, var, vec, version, walsh, wave, wavelet, wavepsf, whiten, window, wshfl, zeros, zexp, ()" -include src/main.h -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu11 -fopenmp -c -o src/slice.o src/slice.c ./ar_lock.sh rsU lib/libbox.a src/slice.o [...] gcc -Wl,-z,relro -Wl,-z,now -rdynamic -rdynamic -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -std=gnu11 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -MMD -MF ./.test_prox.d -iquote /<<PKGBUILDDIR>>/src/ -DUSE_CUDA -I/usr//include -I/usr//include/ -I/usr//include -DFFTWTHREADS -DUTESTS="call_test_thresh, call_test_auto_norm," -o test_prox utests/utest.c utests/test_prox.o lib/libiter.a lib/liblinops.a lib/libnum.a lib/libmisc.a lib/libnum.a lib/libmisc.a -L/usr//lib -lfftw3f -lfftw3f_threads -L/usr//lib -lcufft -lcudart -lcublas -lstdc++ -Wl,-rpath /usr//lib -L/usr//lib -llapacke -lblas -lm ./test_linop_matrix ./test_linop_matrix: 4/ 4 passed. ./test_linop ./test_linop: 3/ 3 passed. ./test_batchsvd ./test_batchsvd: 2/ 2 passed. ./test_pattern ./test_pattern: 1/ 1 passed. ./test_types ./test_types: 2/ 2 passed. ./test_misc ./test_misc: 2/ 2 passed. ./test_moba ./test_moba: 1/ 1 passed. ./test_nlop ./test_nlop: 15/15 passed. ./test_nufft [31mERROR: ./test_nufft: 7/ 8 passed. [0mmake[3]: *** [Makefile:685: utests-all] Error 1 make[3]: Leaving directory '/<<PKGBUILDDIR>>' make[2]: *** [Makefile:273: utest] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>' make[1]: *** [debian/rules:27: override_dh_auto_test] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:21: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 -------------------------------------------------------------------------------- This is essentially the same problem as #1026061, for which we already have a fix, so I'm filing this one mainly for completeness. Note this is not really random, but more like "almost never in some systems" and "almost always in some other systems". In fact, I'm getting a 100% failure rate on the following AWS machine types on which I tried: t3a-medium t3a-small t3a-large c6a-large m6a-large This suggests an issue with different floating point implementations between Intel and AMD, which would also explain why it only fails around 1% of the time for some people. [ Note: I will fix this via team upload, as I did with bart ]. Thanks.
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--- Begin Message ---Source: bart-cuda Source-Version: 0.6.00-1+deb11u1 Done: Santiago Vila <sanv...@debian.org> We believe that the bug you reported is fixed in the latest version of bart-cuda, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1070...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Santiago Vila <sanv...@debian.org> (supplier of updated bart-cuda package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 08 May 2024 16:40:00 +0200 Source: bart-cuda Architecture: source Version: 0.6.00-1+deb11u1 Distribution: bullseye Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Santiago Vila <sanv...@debian.org> Closes: 1070757 Changes: bart-cuda (0.6.00-1+deb11u1) bullseye; urgency=medium . * Team upload. * Cherry-pick relax-failing-unit-test.patch from release 0.7.00-1. Fixes FTBFS bug. Closes: #1070757. Checksums-Sha1: b9bec5f9a0f807febae6028b5dff544344ff7ee0 1793 bart-cuda_0.6.00-1+deb11u1.dsc 51b22b12f84d0595e827b19113f6a9345d7bb080 5208 bart-cuda_0.6.00-1+deb11u1.debian.tar.xz 01d5a43ead89e21c795d9f27c95239ea0f72e4ce 8235 bart-cuda_0.6.00-1+deb11u1_source.buildinfo Checksums-Sha256: 8b5219cc35982d8cb91119950eb9c797b00d4df26868ebc40d1b24812040b1a8 1793 bart-cuda_0.6.00-1+deb11u1.dsc 7bcc704b453201b561839d19c6f5061e7872e823fdde2bec1843fbec33e74a4e 5208 bart-cuda_0.6.00-1+deb11u1.debian.tar.xz b13b2e901937d246dda5e0c3e3ee079d903c38e2e10bb34ec79489e370d0ccce 8235 bart-cuda_0.6.00-1+deb11u1_source.buildinfo Files: 28ac5fabef2d090701a7a627b725f8e8 1793 contrib/science optional bart-cuda_0.6.00-1+deb11u1.dsc 181cf015e90104d1a473d75d37b2a94e 5208 contrib/science optional bart-cuda_0.6.00-1+deb11u1.debian.tar.xz 3ad02755460e4214ce648e882e979d43 8235 contrib/science optional bart-cuda_0.6.00-1+deb11u1_source.buildinfo -----BEGIN PGP SIGNATURE----- iQEzBAEBCAAdFiEE1Uw7+v+wQt44LaXXQc5/C58bizIFAmY7lXMACgkQQc5/C58b izI41ggAji+ZogM8kLbafYOJ0kj4ZlrlbOEMVRGSOjVWgayzEppzVd6HXlbVTXu0 orld4q03h1SKEJ7cijEMVt5tujmvL5UvlB/At+MsO6gu7mhoMK7WWsMbq/yPARjI S/tXnZ9+cj7q7H3btDhACKpPH+08KrEGuMZ4HCXQnYKa4DCdjl2SnjTcLO1OdfvD IQym2f0CBcw5hcfqXLLfBsBnbKC5D4vUPRyDU9WoIsp5w1t1WAe0GtAbB8mbC6O+ aTMAYcyIqvIkvoYEFJbG0FvvyzXC4cXdUdPOKca6H/REkiWpdGs2yG/+12S+otci jkL30K6tqfUAKvtt8pwpJy4Zc1Rjew== =vtT1 -----END PGP SIGNATURE-----pgpsuvAH0A7H9.pgp
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