Dear Shaun and everybody, There is a major update of the IGV, which may be interesting to follow. Unfortunately, I have tried to build it from source but could not produce a JAR file that can be executed. I have been reluctant to modify the master branch of the Git repository where we manage the igv package, as there is a version 1.5.65 on the upstream download area, but not in their changelog, which suggests that there may be some maintainance.
What shall I do: share work on version 2.0 in our master branch, make a separate branch for the moment, or provide a temporary fork separately ? For the record, the error I get is: log4j:ERROR Could not find value for key log4j.appender.R log4j:ERROR Could not instantiate appender named "R". ERROR [2011-06-28 15:16:26,637] [DefaultExceptionHandler.java:42] [main] Unhandled exception java.lang.NoClassDefFoundError: org/apache/log4j/RollingFileAppender at org.broad.igv.ui.Main.initializeLog(Main.java:225) at org.broad.igv.ui.Main.initApplication(Main.java:94) at org.broad.igv.ui.Main.main(Main.java:70) Caused by: java.lang.ClassNotFoundException: org.apache.log4j.RollingFileAppender at java.net.URLClassLoader$1.run(URLClassLoader.java:217) at java.security.AccessController.doPrivileged(Native Method) at java.net.URLClassLoader.findClass(URLClassLoader.java:205) at java.lang.ClassLoader.loadClass(ClassLoader.java:321) at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294) at java.lang.ClassLoader.loadClass(ClassLoader.java:266) at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:334) ... 3 more Have a nice day, -- Charles Plessy Debian Med packaging team, http://www.debian.org/devel/debian-med Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/20110628061749.gb32...@merveille.plessy.net