Source: dune-grid-glue Version: 2.7.0-2 Severity: serious Justification: FTBFS on amd64 Tags: bullseye sid ftbfs Usertags: ftbfs-20200802 ftbfs-bullseye
Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > make[5]: Entering directory '/<<PKGBUILDDIR>>/build' > make[5]: Nothing to be done for 'CMakeFiles/build_tests.dir/build'. > make[5]: Leaving directory '/<<PKGBUILDDIR>>/build' > [100%] Built target build_tests > make[4]: Leaving directory '/<<PKGBUILDDIR>>/build' > /usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/build/CMakeFiles 0 > make[3]: Leaving directory '/<<PKGBUILDDIR>>/build' > make[2]: Leaving directory '/<<PKGBUILDDIR>>/build' > cd build; PATH=/<<PKGBUILDDIR>>/debian/tmp-test:$PATH /usr/bin/dune-ctest > Site: ip-172-31-4-50 > Build name: Linux-c++ > Create new tag: 20200802-1723 - Experimental > Test project /<<PKGBUILDDIR>>/build > Start 1: callmergertwicetest > 1/12 Test #1: callmergertwicetest ................ Passed 0.00 sec > Start 2: ringcommtest > 2/12 Test #2: ringcommtest ....................... Passed 0.32 sec > Start 3: ringcommtest-mpi-2 > 3/12 Test #3: ringcommtest-mpi-2 .................***Failed 2.27 sec > SIZE: 2 > 0: COMM 0x558be8fd81c0 > 0 Start Communication, size 2 > SIZE: 2 > 1: COMM 0x55f1640f31c0 > 1 Start Communication, size 2 > 0 maxSize done... > 1 maxSize done... > 0: size = 2 > 0: left = 1 right = 1 > 0: next = 1 > 1: size = 2 > 1: left = 0 right = 0 > 1: next = 0 > terminate called after throwing an instance of 'Dune::Exception' > terminate called after throwing an instance of 'Dune::Exception' > what(): Dune::Exception > [eh:/<<PKGBUILDDIR>>/dune/grid-glue/test/ringcommtest.cc:24]: MPI ERROR -- > MPI_ERR_TAG: invalid tag > what(): Dune::Exception > [eh:/<<PKGBUILDDIR>>/dune/grid-glue/test/ringcommtest.cc:24]: MPI ERROR -- > MPI_ERR_TAG: invalid tag > [ip-172-31-4-50:19859] *** Process received signal *** > [ip-172-31-4-50:19860] *** Process received signal *** > [ip-172-31-4-50:19859] Signal: Aborted (6) > [ip-172-31-4-50:19859] Signal code: (-6) > [ip-172-31-4-50:19860] Signal: Aborted (6) > [ip-172-31-4-50:19860] Signal code: (-6) > [ip-172-31-4-50:19859] [ 0] [ip-172-31-4-50:19860] [ 0] > /lib/x86_64-linux-gnu/libc.so.6(+0x3bd30)[0x7fafcbac6d30] > [ip-172-31-4-50:19859] [ 1] > /lib/x86_64-linux-gnu/libc.so.6(+0x3bd30)[0x7fd42a3f2d30] > [ip-172-31-4-50:19860] [ 1] > /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7fd42a3f2cb1] > [ip-172-31-4-50:19860] [ 2] > /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7fafcbac6cb1] > [ip-172-31-4-50:19859] [ 2] > /lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7fd42a3dc537] > [ip-172-31-4-50:19860] [ 3] > /lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7fafcbab0537] > [ip-172-31-4-50:19859] [ 3] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x9a80c)[0x7fd42a63080c] > [ip-172-31-4-50:19860] [ 4] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x9a80c)[0x7fafcbd0480c] > [ip-172-31-4-50:19859] [ 4] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa58f6)[0x7fd42a63b8f6] > [ip-172-31-4-50:19860] [ 5] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa58f6)[0x7fafcbd0f8f6] > [ip-172-31-4-50:19859] [ 5] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5961)[0x7fafcbd0f961] > [ip-172-31-4-50:19859] [ 6] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5961)[0x7fd42a63b961] > [ip-172-31-4-50:19860] [ 6] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5bf5)[0x7fd42a63bbf5] > [ip-172-31-4-50:19860] [ 7] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/ringcommtest(+0x3386)[0x55f1640ee386] > [ip-172-31-4-50:19860] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5bf5)[0x7fafcbd0fbf5] > [ip-172-31-4-50:19859] [ 7] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/ringcommtest(+0x3386)[0x558be8fd3386] > [ip-172-31-4-50:19859] [ 8] [ 8] > /usr/lib/x86_64-linux-gnu/libmpi.so.40(ompi_errhandler_invoke+0xd7)[0x7fafcbe91337] > [ip-172-31-4-50:19859] [ 9] > /usr/lib/x86_64-linux-gnu/libmpi.so.40(ompi_errhandler_invoke+0xd7)[0x7fd42a7bd337] > [ip-172-31-4-50:19860] [ 9] > /usr/lib/x86_64-linux-gnu/libmpi.so.40(MPI_Isend+0x265)[0x7fafcbed17c5] > [ip-172-31-4-50:19859] [10] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/ringcommtest(main+0x949)[0x558be8fd3da9] > [ip-172-31-4-50:19859] [11] > /usr/lib/x86_64-linux-gnu/libmpi.so.40(MPI_Isend+0x265)[0x7fd42a7fd7c5] > [ip-172-31-4-50:19860] [10] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/ringcommtest(main+0x949)[0x55f1640eeda9] > [ip-172-31-4-50:19860] [11] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7fd42a3ddcca] > [ip-172-31-4-50:19860] [12] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/ringcommtest(_start+0x2a)[0x55f1640ef43a] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7fafcbab1cca] > [ip-172-31-4-50:19859] [12] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/ringcommtest(_start+0x2a)[0x558be8fd443a] > [ip-172-31-4-50:19859] *** End of error message *** > [ip-172-31-4-50:19860] *** End of error message *** > -------------------------------------------------------------------------- > Primary job terminated normally, but 1 process returned > a non-zero exit code. Per user-direction, the job has been aborted. > -------------------------------------------------------------------------- > -------------------------------------------------------------------------- > mpiexec noticed that process rank 1 with PID 0 on node ip-172-31-4-50 exited > on signal 6 (Aborted). > -------------------------------------------------------------------------- > > Start 4: computecyclicordertest > 4/12 Test #4: computecyclicordertest ............. Passed 0.00 sec > Start 5: disconnectedtest > 5/12 Test #5: disconnectedtest ................... Passed 0.33 sec > Start 6: mixeddimcouplingtest > 6/12 Test #6: mixeddimcouplingtest ............... Passed 0.31 sec > Start 7: mixeddimoverlappingtest > 7/12 Test #7: mixeddimoverlappingtest ............ Passed 0.30 sec > Start 8: mixeddimscalingtest > 8/12 Test #8: mixeddimscalingtest ................ Passed 0.31 sec > Start 9: nonoverlappingcouplingtest > 9/12 Test #9: nonoverlappingcouplingtest ......... Passed 0.31 sec > Start 10: nonoverlappingcouplingtest-mpi-2 > 10/12 Test #10: nonoverlappingcouplingtest-mpi-2 ...***Failed 2.28 sec > ==== 2D hybrid ============================================= > ==== 2D hybrid ============================================= > This is Codim1Extractor on a <2,2> grid! > This is Codim1Extractor on a <2,2> grid! > added 8 subfaces > This is Codim1Extractor on a <2,2> grid! > added 0 subfaces > This is Codim1Extractor on a <2,2> grid! > added 8 subfaces > added 0 subfaces > GridGlue: Constructor succeeded! > GridGlue: Constructor succeeded! > >>>> rank 0 coords: 0 and 9 > >>>> rank 0 entities: 0 and 16 > >>>> rank 0 types: 0 and 8 > 0: size = 2 > 0: left = 1 right = 1 > 0: next = 1 > >>>> rank 1 coords: 9 and 0 > >>>> rank 1 entities: 16 and 0 > >>>> rank 1 types: 8 and 0 > 1: size = 2 > 1: left = 0 right = 0 > 1: next = 0 > terminate called after throwing an instance of 'Dune::Exception' > terminate called after throwing an instance of 'Dune::Exception' > what(): Dune::Exception > [eh:/<<PKGBUILDDIR>>/dune/grid-glue/test/nonoverlappingcouplingtest.cc:319]: > MPI ERROR -- MPI_ERR_TAG: invalid tag > what(): Dune::Exception > [eh:/<<PKGBUILDDIR>>/dune/grid-glue/test/nonoverlappingcouplingtest.cc:319]: > MPI ERROR -- MPI_ERR_TAG: invalid tag > [ip-172-31-4-50:19955] *** Process received signal *** > [ip-172-31-4-50:19956] *** Process received signal *** > [ip-172-31-4-50:19955] Signal: Aborted (6) > [ip-172-31-4-50:19955] Signal code: (-6) > [ip-172-31-4-50:19956] Signal: Aborted (6) > [ip-172-31-4-50:19956] Signal code: (-6) > [ip-172-31-4-50:19955] [ 0] [ip-172-31-4-50:19956] [ 0] > /lib/x86_64-linux-gnu/libc.so.6(+0x3bd30)[0x7f7f66d02d30] > [ip-172-31-4-50:19955] [ 1] > /lib/x86_64-linux-gnu/libc.so.6(+0x3bd30)[0x7fcfd7c37d30] > [ip-172-31-4-50:19956] [ 1] > /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7f7f66d02cb1] > [ip-172-31-4-50:19955] [ 2] > /lib/x86_64-linux-gnu/libc.so.6(gsignal+0x141)[0x7fcfd7c37cb1] > [ip-172-31-4-50:19956] [ 2] > /lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7f7f66cec537] > [ip-172-31-4-50:19955] [ 3] > /lib/x86_64-linux-gnu/libc.so.6(abort+0x123)[0x7fcfd7c21537] > [ip-172-31-4-50:19956] [ 3] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x9a80c)[0x7f7f6708680c] > [ip-172-31-4-50:19955] [ 4] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0x9a80c)[0x7fcfd7fbb80c] > [ip-172-31-4-50:19956] [ 4] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa58f6)[0x7f7f670918f6] > [ip-172-31-4-50:19955] [ 5] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa58f6)[0x7fcfd7fc68f6] > [ip-172-31-4-50:19956] [ 5] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5961)[0x7f7f67091961] > [ip-172-31-4-50:19955] [ 6] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5961)[0x7fcfd7fc6961] > [ip-172-31-4-50:19956] [ 6] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5bf5)[0x7f7f67091bf5] > [ip-172-31-4-50:19955] [ 7] > /usr/lib/x86_64-linux-gnu/libstdc++.so.6(+0xa5bf5)[0x7fcfd7fc6bf5] > [ip-172-31-4-50:19956] [ 7] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(+0x246b1)[0x563036acc6b1] > [ip-172-31-4-50:19955] [ 8] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(+0x246b1)[0x563c725126b1] > [ip-172-31-4-50:19956] [ 8] > /usr/lib/x86_64-linux-gnu/libmpi.so.40(ompi_errhandler_invoke+0xd7)[0x7f7f6724e337] > [ip-172-31-4-50:19955] [ 9] > /usr/lib/x86_64-linux-gnu/libmpi.so.40(ompi_errhandler_invoke+0xd7)[0x7fcfd8183337] > [ip-172-31-4-50:19956] [ 9] > /usr/lib/x86_64-linux-gnu/libmpi.so.40(MPI_Isend+0x265)[0x7f7f6728e7c5] > [ip-172-31-4-50:19955] [10] > /usr/lib/x86_64-linux-gnu/libmpi.so.40(MPI_Isend+0x265)[0x7fcfd81c37c5] > [ip-172-31-4-50:19956] [10] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_ZN4Dune8Parallel4Impl20MPI_SendVectorInRingINS_11FieldVectorIdLi2EEEEEvRSt6vectorIT_SaIS6_EES9_iiiP19ompi_communicator_tRP14ompi_request_tSE_+0x7b)[0x563036b1066b] > [ip-172-31-4-50:19955] [11] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_ZN4Dune8Parallel4Impl20MPI_SendVectorInRingINS_11FieldVectorIdLi2EEEEEvRSt6vectorIT_SaIS6_EES9_iiiP19ompi_communicator_tRP14ompi_request_tSE_+0x7b)[0x563c7255666b] > [ip-172-31-4-50:19956] [11] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(+0x27988)[0x563036acf988] > [ip-172-31-4-50:19955] [12] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(+0x27988)[0x563c72515988] > [ip-172-31-4-50:19956] [12] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_ZN4Dune8GridGlue8GridGlueINS0_15Codim1ExtractorINS_8GridViewINS_26DefaultLevelGridViewTraitsIKNS_8YaspGridILi2ENS_28EquidistantOffsetCoordinatesIdLi2EEEEEEEEEEESC_E5buildEv+0xf44)[0x563036b519f4] > [ip-172-31-4-50:19955] [13] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_ZN4Dune8GridGlue8GridGlueINS0_15Codim1ExtractorINS_8GridViewINS_26DefaultLevelGridViewTraitsIKNS_8YaspGridILi2ENS_28EquidistantOffsetCoordinatesIdLi2EEEEEEEEEEESC_E5buildEv+0xf44)[0x563c725979f4] > [ip-172-31-4-50:19956] [13] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_Z21testMatchingCubeGridsILi2EEvv+0x36b)[0x563036b5e84b] > [ip-172-31-4-50:19955] [14] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_Z21testMatchingCubeGridsILi2EEvv+0x36b)[0x563c725a484b] > [ip-172-31-4-50:19956] [14] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(main+0x79)[0x563036acce79] > [ip-172-31-4-50:19955] [15] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(main+0x79)[0x563c72512e79] > [ip-172-31-4-50:19956] [15] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7f7f66cedcca] > [ip-172-31-4-50:19955] [16] > /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xea)[0x7fcfd7c22cca] > [ip-172-31-4-50:19956] [16] > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_start+0x2a)[0x563036acd03a] > [ip-172-31-4-50:19955] *** End of error message *** > /<<PKGBUILDDIR>>/build/dune/grid-glue/test/nonoverlappingcouplingtest(_start+0x2a)[0x563c7251303a] > [ip-172-31-4-50:19956] *** End of error message *** > -------------------------------------------------------------------------- > Primary job terminated normally, but 1 process returned > a non-zero exit code. Per user-direction, the job has been aborted. > -------------------------------------------------------------------------- > -------------------------------------------------------------------------- > mpiexec noticed that process rank 0 with PID 0 on node ip-172-31-4-50 exited > on signal 6 (Aborted). > -------------------------------------------------------------------------- > > Start 11: overlappingcouplingtest > 11/12 Test #11: overlappingcouplingtest ............ Passed 0.36 sec > Start 12: projectiontest > 12/12 Test #12: projectiontest ..................... Passed 0.00 sec > > 83% tests passed, 2 tests failed out of 12 > > Total Test time (real) = 6.83 sec > > The following tests FAILED: > 3 - ringcommtest-mpi-2 (Failed) > 10 - nonoverlappingcouplingtest-mpi-2 (Failed) > Errors while running CTest > ====================================================================== > Name: ringcommtest-mpi-2 > FullName: ./dune/grid-glue/test/ringcommtest-mpi-2 > Status: FAILED > > ====================================================================== > Name: nonoverlappingcouplingtest-mpi-2 > FullName: ./dune/grid-glue/test/nonoverlappingcouplingtest-mpi-2 > Status: FAILED > > JUnit report for CTest results written to > /<<PKGBUILDDIR>>/build/junit/cmake.xml > make[1]: *** [/usr/share/dune/dune-debian.mk:39: override_dh_auto_test] Error > 1 The full build log is available from: http://qa-logs.debian.net/2020/08/02/dune-grid-glue_2.7.0-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. -- debian-science-maintainers mailing list debian-science-maintainers@alioth-lists.debian.net https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
