Package: wnpp Severity: wishlist Subject: ITP: constellations -- mutations for the SARS-CoV-2 virus Package: wnpp Owner: Andreas Tille <ti...@debian.org> Severity: wishlist
* Package name : constellations Version : 0.1.10 Upstream Author : Andrew Rambaut, Rachel Colquhoun, Áine O'Toole, * URL : https://github.com/cov-lineages/constellations * License : GPL-3 Programming Lang: Python Description : mutations for the SARS-CoV-2 virus Descriptions of constellations of mutations for the SARS-CoV-2 virus. . A constellation is a collection of mutations which are functionally meaningful, but which may arise independently a number of times. . Included are files that define: . * lineages of concern - for these lineages, the defining mutations have been extracted so that individual sequences can be classified deterministically * genomically interesting regions e.g. RBD sites which interact with ACE2 . In addition we include a JSON file describing the reference sequence and the coordinates of genes/proteins. Mutations can therefore be described with respect to the amino acid position within these features. Remark: This package is maintained by Debian Med Packaging Team at https://salsa.debian.org/med-team/constellations
