Maybe it’s wroth contacting the CRAN maintainers to ask for help? Perhaps we aren’t disabling it correctly, or perhaps they can ignore this specific failure. +Shivaram who might have some ideas.
Matei > On Nov 5, 2018, at 9:09 PM, Felix Cheung <felixcheun...@hotmail.com> wrote: > > I don¡Št know what the cause is yet. > > The test should be skipped because of this check > https://github.com/apache/spark/blob/branch-2.4/R/pkg/inst/tests/testthat/test_basic.R#L21 > > And this > https://github.com/apache/spark/blob/branch-2.4/R/pkg/inst/tests/testthat/test_basic.R#L57 > > But it ran: > callJStatic("org.apache.spark.ml.r.GeneralizedLinearRegressionWrapper", > "fit", formula, > > The earlier release was achived because of Java 11+ too so this unfortunately > isn¡Št new. > > > From: Sean Owen <sro...@gmail.com> > Sent: Monday, November 5, 2018 7:22 PM > To: Felix Cheung > Cc: dev > Subject: Re: [CRAN-pretest-archived] CRAN submission SparkR 2.4.0 > > What can we do to get the release through? is there any way to > circumvent these tests or otherwise hack it? or does it need a > maintenance release? > On Mon, Nov 5, 2018 at 8:53 PM Felix Cheung <felixcheun...@hotmail.com> wrote: > > > > FYI. SparkR submission failed. It seems to detect Java 11 correctly with > > vignettes but not skipping tests as would be expected. > > > > Error: processing vignette ¡¥sparkr-vignettes.Rmd¡Š failed with diagnostics: > > Java version 8 is required for this package; found version: 11.0.1 > > Execution halted > > > > * checking PDF version of manual ... OK > > * DONE > > Status: 1 WARNING, 1 NOTE > > > > Current CRAN status: ERROR: 1, OK: 1 > > See: <https://CRAN.R-project.org/web/checks/check_results_SparkR.html> > > > > Version: 2.3.0 > > Check: tests, Result: ERROR > > Running ¡¥run-all.R¡Š [8s/35s] > > Running the tests in ¡¥tests/run-all.R¡Š failed. > > Last 13 lines of output: > > 4: callJStatic("org.apache.spark.ml.r.GeneralizedLinearRegressionWrapper", > > "fit", formula, > > data@sdf, tolower(family$family), family$link, tol, as.integer(maxIter), > > weightCol, > > regParam, as.double(var.power), as.double(link.power), > > stringIndexerOrderType, > > offsetCol) > > 5: invokeJava(isStatic = TRUE, className, methodName, ...) > > 6: handleErrors(returnStatus, conn) > > 7: stop(readString(conn)) > > > > ùùùù testthat results > > ùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùùù > > OK: 0 SKIPPED: 0 FAILED: 2 > > 1. Error: create DataFrame from list or data.frame (@test_basic.R#26) > > 2. Error: spark.glm and predict (@test_basic.R#58) > > > > > > > > ---------- Forwarded message --------- > > Date: Mon, Nov 5, 2018, 10:12 > > Subject: [CRAN-pretest-archived] CRAN submission SparkR 2.4.0 > > > > Dear maintainer, > > > > package SparkR_2.4.0.tar.gz does not pass the incoming checks > > automatically, please see the following pre-tests: > > Windows: > > <https://win-builder.r-project.org/incoming_pretest/SparkR_2.4.0_20181105_165757/Windows/00check.log> > > Status: 1 NOTE > > Debian: > > <https://win-builder.r-project.org/incoming_pretest/SparkR_2.4.0_20181105_165757/Debian/00check.log> > > Status: 1 WARNING, 1 NOTE > > > > Last released version's CRAN status: ERROR: 1, OK: 1 > > See: <https://CRAN.R-project.org/web/checks/check_results_SparkR.html> > > > > CRAN Web: <https://cran.r-project.org/package=SparkR> > > > > Please fix all problems and resubmit a fixed version via the webform. > > If you are not sure how to fix the problems shown, please ask for help on > > the R-package-devel mailing list: > > <https://stat.ethz.ch/mailman/listinfo/r-package-devel> > > If you are fairly certain the rejection is a false positive, please > > reply-all to this message and explain. > > > > More details are given in the directory: > > <https://win-builder.r-project.org/incoming_pretest/SparkR_2.4.0_20181105_165757/> > > The files will be removed after roughly 7 days. > > > > No strong reverse dependencies to be checked. > > > > Best regards, > > CRAN teams' auto-check service > > Flavor: r-devel-linux-x86_64-debian-gcc, r-devel-windows-ix86+x86_64 > > Check: CRAN incoming feasibility, Result: NOTE > > Maintainer: 'Shivaram Venkataraman <shiva...@cs.berkeley.edu>' > > > > New submission > > > > Package was archived on CRAN > > > > Possibly mis-spelled words in DESCRIPTION: > > Frontend (4:10, 5:28) > > > > CRAN repository db overrides: > > X-CRAN-Comment: Archived on 2018-05-01 as check problems were not > > corrected despite reminders. > > > > Flavor: r-devel-linux-x86_64-debian-gcc > > Check: re-building of vignette outputs, Result: WARNING > > Error in re-building vignettes: > > ... > > > > Attaching package: 'SparkR' > > > > The following objects are masked from 'package:stats': > > > > cov, filter, lag, na.omit, predict, sd, var, window > > > > The following objects are masked from 'package:base': > > > > as.data.frame, colnames, colnames<-, drop, endsWith, > > intersect, rank, rbind, sample, startsWith, subset, summary, > > transform, union > > > > trying URL > > 'http://mirror.klaus-uwe.me/apache/spark/spark-2.4.0/spark-2.4.0-bin-hadoop2.7.tgz' > > Content type 'application/octet-stream' length 227893062 bytes (217.3 MB) > > ================================================== > > downloaded 217.3 MB > > > > Quitting from lines 65-67 (sparkr-vignettes.Rmd) > > Error: processing vignette 'sparkr-vignettes.Rmd' failed with diagnostics: > > Java version 8 is required for this package; found version: 11.0.1 > > Execution halted --------------------------------------------------------------------- To unsubscribe e-mail: dev-unsubscr...@spark.apache.org
