Dear All, Our MPRAGE and T2 SPACE FLAIR sequences are acquired at times during two different scans, and the MPRAGE seq further gets reoriented in a pipeline upstream of the Freesurfer step. For best results, does the FLAIR volume have to be reoriented (and resliced) in a rigid registration to the MPRAGE before recon-all -all stage, or it does not matter?
Thank you, Octavian
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