Phill,

The values you set for GNC_DATA_HOME and GNC_CONFIG_HOME are the defaults when 
these variables are not set. So there's no need to explicitly set them, only if 
you want to 
override the default values.

It's normal that there's nothing in GNC_CONFIG_HOME. GnuCash will never write 
files in that 
directory itself, but it will look for user generated config files in there 
(log.conf or config-
user.scm currently).

Next, I'm not sure we are talking about the same thing really when we refer to 
"data files". To 
avoid further confusion I'll define a few things first:

"Data files" are the ones containing your actual accounting data. These files 
normally have 
file extension ".gnucash". If you have these files from the 1.x period they may 
also have no 
extension at all or the ".xacc" extension.

"Backup files" are autogenerated by gnucash and - as the name suggests - 
contain backups 
of your accounting data. They are generated in the same directory as your "Data 
file" and 
have as file name
<Data file name>.<timestamp>.gnucash

"Log files" in this context are also auto generated by gnucash and contain a 
transaction log. 
That is it logs all changes made to transactions in chronological order between 
file saves. 
They can be used to replay such changes on top of a backup file to restore lost 
data. They are 
also generated in the same directory as the "Data files" and have as file name
<Data file name>.<timestamp>.log

"Metadata files" or "state files" contain non-accounting data. That is it will 
record per "Data 
file" which windows and tabs you had open last time you were working with that 
"Data file", 
it will also remember window positions and sizes, the options for reports that 
were still open 
and so on. There is exactly one "Metadata file" per "Data file" and these will 
be stored in
GNC_DATA_HOME/books. The name of such a file will be
<Data file><optional-sequence-number>.gcm

"Saved reports" is a bit of an outlier. It is a single file that contains all 
"Saved report 
configurations" you have created in gnucash. For historical reasons this file 
is shared by all 
your "Data files". It is found in GNC_DATA_HOME and is called 
saved-reports-<version>


With those defined, let's turn back to the migration. I'm surprised your 
DOT_GNUCASH_DIR 
is empty. GnuCash will only *copy* files during migration, not move. So even in 
the case of a 
successful migration, the original files should have still been in 
DOT_GNUCASH_DIR. I'd 
expect at least a populated books directory and a saved-reports file, unless 
you never 
created custom report configurations.

I also quickly checked and found the migration code is slightly dumb in that it 
will copy *all* 
files in DOT_GNUCASH_DIR. That will include your data files, backup files and 
log files if you 
effectively had stored them. But that leads to a very tricky situation 
unfortunately: without 
explicit action, gnucash would continue automatically open your data file from 
the 
DOT_GNUCASH_DIR directory while you might believe that after migration the 
files should be 
loaded from GNC_DATA_HOME. I think you have more or less solved this by moving 
the data 
file (and log and backup files) to $HOME/Documents/gnucash. But I just wanted 
to point this 
out to be sure you're not inadvertently get caught by this confusion.

As for the .gcm file sizes: these files hold the state of your windows, tabs 
open reports and so 
on. I presume you had many more open last time you ran gnucash with the old 
.gcm files in 
place. Rerunning gnucash without a .gcm file is like a reset of your state 
information. It will 
only open single account hierarchy page and unless you reopened all tabs and 
reports 
before closing like you had before that would explain why the old one is much 
bigger.

A few final remarks:
* You never mentioned this, but normally gnucash would pop up a message when it 
has 
attempted this migration. Did you actually get this message ?
* You mentioned you were migrating from gnucash 1.x. Was that really the 
previous version 
of gnucash you ran on your system, or just that the data file you now opened 
was last 
opened with gnucash 1.x ? Somewhere in the 2.x series we switched backends for 
these 
preferences (from the old GConf to the newer DConf). Migration between these 
two 
backends has been done somewhere between 2.x and 3.x, but that migration code 
is no 
longer present in gnucash 4.x. So if you really never ran gnucash 2.x and 3.x, 
this means all 
your preferences have been reset to default. In that case you probably want to 
go through 
your preferences again in "Edit->Preferences" to check if they are still as you 
want them to 
be.
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