I've been having the same issue since building a new system a couple
months ago. The frequency is inconsistent, but rarely happens more than
once per day. Sometimes I'll lose my keyboard mid-sentence, and other
times I won't be able to unlock the system in the morning.

Oddly, my USB mouse (a Razer Naga) always still works, and the side
buttons which act as a number pad also always work. However, by USB hub
loses power, and neither it nor my keyboard ever regain power or
functionality when re-plugging or switching ports. It's always fixed by
a reboot.

I'm on a Threadripper 3990x with an ASUS ROG Zenith II Extreme
motherboard.

Here's the snippet from /var/log/syslog:

Jan 14 19:37:19 amaranth systemd[1]: fprintd.service: Succeeded.
Jan 14 19:38:44 amaranth kernel: [37857.592954] xhci_hcd 0000:49:00.3: Mismatch 
between completed Set TR Deq Ptr command & xHCI internal state.
Jan 14 19:38:44 amaranth kernel: [37857.592957] xhci_hcd 0000:49:00.3: ep deq 
seg = 000000003ccd0405, deq ptr = 000000006daebfd1
Jan 14 19:38:45 amaranth kernel: [37858.593779] xhci_hcd 0000:49:00.3: AMD-Vi: 
Event logged [IO_PAGE_FAULT domain=0x0035 address=0x0 flags=0x0000]
Jan 14 19:38:50 amaranth kernel: [37863.667171] xhci_hcd 0000:49:00.3: xHCI 
host not responding to stop endpoint command.
Jan 14 19:38:50 amaranth kernel: [37863.667178] xhci_hcd 0000:49:00.3: xHCI 
host controller not responding, assume dead
Jan 14 19:38:50 amaranth kernel: [37863.667220] xhci_hcd 0000:49:00.3: HC died; 
cleaning up
Jan 14 19:38:50 amaranth kernel: [37863.667255] usb 9-3: USB disconnect, device 
number 2
Jan 14 19:38:50 amaranth kernel: [37863.667258] usb 9-3.1: USB disconnect, 
device number 4
Jan 14 19:38:50 amaranth kernel: [37863.667447] usb 10-3: USB disconnect, 
device number 2
Jan 14 19:38:50 amaranth kernel: [37863.667449] usb 10-3.2: USB disconnect, 
device number 4
Jan 14 19:38:50 amaranth kernel: [37863.667451] usb 10-3.2.4: USB disconnect, 
device number 5
Jan 14 19:38:50 amaranth kernel: [37863.668402] usb 10-4: USB disconnect, 
device number 3
Jan 14 19:38:50 amaranth kernel: [37863.735579] usb 9-3.2: USB disconnect, 
device number 6
Jan 14 19:38:50 amaranth kernel: [37863.735581] usb 9-3.2.3: USB disconnect, 
device number 7
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 17
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 8
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 9
Jan 14 19:38:50 amaranth kernel: [37863.979627] usb 9-3.2.4: USB disconnect, 
device number 9
Jan 14 19:38:50 amaranth kernel: [37863.979630] usb 9-3.2.4.4: USB disconnect, 
device number 10
Jan 14 19:38:50 amaranth kernel: [37864.076604] usb 9-4: USB disconnect, device 
number 3
Jan 14 19:38:50 amaranth kernel: [37864.076833] usb 9-5: USB disconnect, device 
number 5
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 7
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 10
Jan 14 19:38:50 amaranth kernel: [37864.231560] usb 9-6: USB disconnect, device 
number 8
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 11
Jan 14 19:38:50 amaranth acpid: input device has been disconnected, fd 12

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https://bugs.launchpad.net/bugs/1908894

Title:
  USB controllers disconnects after random time

Status in linux package in Ubuntu:
  Confirmed

Bug description:
  Since I installed Ubuntu on my new convertible laptop, I got issues with the 
USB. Just after boot my USB controller is working properly (I can connect usb 
sticks, mices, and my internal camera works) and at some point long after it 
suddenly stop working (mices suddenly stop moving even when used, webcam and 
sticks no more detected).
  This can happend few minuts after boot, or several days after.
  Yet I have not been able to find what triggers the failure. It happends at 
any time during normal usage of the computer, including during the usb usage.

  more concrete infos:
  after failure, I get
  $ dmesg

  [ 2671.894099] perf: interrupt took too long (2512 > 2500), lowering 
kernel.perf_event_max_sample_rate to 79500
  [ 3262.197917] xhci_hcd 0000:03:00.3: Mismatch between completed Set TR Deq 
Ptr command & xHCI internal state.
  [ 3262.197927] xhci_hcd 0000:03:00.3: ep deq seg = 000000008dafef36, deq ptr 
= 000000005f96ce32
  [ 3262.198052] xhci_hcd 0000:03:00.3: AMD-Vi: Event logged [IO_PAGE_FAULT 
domain=0x000a address=0x0 flags=0x0000]
  [ 3267.250397] xhci_hcd 0000:03:00.3: xHCI host not responding to stop 
endpoint command.
  [ 3267.250428] xhci_hcd 0000:03:00.3: xHCI host controller not responding, 
assume dead
  [ 3267.250463] xhci_hcd 0000:03:00.3: HC died; cleaning up
  [ 3267.250499] usb 1-3: USB disconnect, device number 2
  [ 3267.311251] usb 1-4: USB disconnect, device number 3

  and lsusb doesn't show my devices anymore, even the newly inserted
  ones

  config: Asus Zenbook flip 14 UM462DA

  ProblemType: Bug
  DistroRelease: Ubuntu 20.04
  Package: linux-image-5.4.0-58-generic 5.4.0-58.64
  ProcVersionSignature: Ubuntu 5.4.0-58.64-generic 5.4.73
  Uname: Linux 5.4.0-58-generic x86_64
  ApportVersion: 2.20.11-0ubuntu27.14
  Architecture: amd64
  AudioDevicesInUse:
   USER        PID ACCESS COMMAND
   /dev/snd/controlC1:  jimy       1523 F.... pulseaudio
   /dev/snd/controlC0:  jimy       1523 F.... pulseaudio
   /dev/snd/pcmC1D0p:   jimy       1523 F...m pulseaudio
   /dev/snd/timer:      jimy       1523 f.... pulseaudio
  CasperMD5CheckResult: skip
  CurrentDesktop: KDE
  Date: Mon Dec 21 11:51:08 2020
  InstallationDate: Installed on 2020-07-28 (146 days ago)
  InstallationMedia: Ubuntu 20.04 LTS "Focal Fossa" - Release amd64 (20200423)
  Lsusb:
   Bus 004 Device 001: ID 1d6b:0003 Linux Foundation 3.0 root hub
   Bus 003 Device 002: ID 8087:0a2b Intel Corp. 
   Bus 003 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
   Bus 002 Device 001: ID 1d6b:0003 Linux Foundation 3.0 root hub
   Bus 001 Device 001: ID 1d6b:0002 Linux Foundation 2.0 root hub
  MachineType: ASUSTeK COMPUTER INC. ZenBook UX462DA
  ProcFB: 0 amdgpudrmfb
  ProcKernelCmdLine: BOOT_IMAGE=/boot/vmlinuz-5.4.0-58-generic 
root=UUID=ba0f4ac4-b614-4882-83d6-485690f9a61a ro quiet splash vt.handoff=7
  RelatedPackageVersions:
   linux-restricted-modules-5.4.0-58-generic N/A
   linux-backports-modules-5.4.0-58-generic  N/A
   linux-firmware                            1.187.6
  SourcePackage: linux
  UpgradeStatus: No upgrade log present (probably fresh install)
  dmi.bios.date: 09/28/2020
  dmi.bios.vendor: American Megatrends Inc.
  dmi.bios.version: UX462DA.307
  dmi.board.asset.tag: ATN12345678901234567
  dmi.board.name: UX462DA
  dmi.board.vendor: ASUSTeK COMPUTER INC.
  dmi.board.version: 1.0
  dmi.chassis.asset.tag: No Asset Tag
  dmi.chassis.type: 31
  dmi.chassis.vendor: ASUSTeK COMPUTER INC.
  dmi.chassis.version: 1.0
  dmi.modalias: 
dmi:bvnAmericanMegatrendsInc.:bvrUX462DA.307:bd09/28/2020:svnASUSTeKCOMPUTERINC.:pnZenBookUX462DA:pvr1.0:rvnASUSTeKCOMPUTERINC.:rnUX462DA:rvr1.0:cvnASUSTeKCOMPUTERINC.:ct31:cvr1.0:
  dmi.product.family: ZenBook Flip
  dmi.product.name: ZenBook UX462DA
  dmi.product.version: 1.0
  dmi.sys.vendor: ASUSTeK COMPUTER INC.

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