For reasons due to CRAN becoming more stringent with S3-type function calls, we needed to change the plot.param to:
plot_param … (the previous no looks for an object or function called ‘param’). Dean Dr. Dean C. Adams Distinguished Professor of Evolutionary Biology Department of Ecology, Evolution, and Organismal Biology Iowa State University https://faculty.sites.iastate.edu/dcadams/ phone: 515-294-3834 From: morphmet2@googlegroups.com <morphmet2@googlegroups.com> On Behalf Of Mauro Cavalcanti Sent: Saturday, March 9, 2024 2:52 PM To: Morphmet <morphmet2@googlegroups.com> Subject: [MORPHMET2] Error attempting running 'plotAllSpecimens()' function in geomorph R package Dear ALL, I have been getting an error when attempting to run function plotAllSpecimens() in geomorph R. package version 4.0.7 (the latest). The error appears when I attempt to pass a list of parameters to customize the plot. I tried the following: data(plethodon) Y.gpa<-gpagen(plethodon$land, print.progress = FALSE) plotAllSpecimens(Y.gpa$coords,links=plethodon$links,label=TRUE, plot.param = list(pt.bg<http://pt.bg> = "green", mean.cex=1, link.col="red", txt.pos=3, txt.cex=1)) The error message below is displayed: Error in plotAllSpecimens(Y.gpa$coords, links = plethodon$links, label = TRUE, : unused argument (plot.param = list(pt.bg<http://pt.bg> = "green", mean.cex = 1, link.col = "red", txt.pos = 3, txt.cex = 1)) Looking quickly at the function source, I could not discern any obvious problems. I am currently running R version 4.3.2 and get the warming messages below when loading geomorph and associated packages: Warning messages: 1: package ‘geomorph’ was built under R version 4.3.3 2: package ‘rgl’ was built under R version 4.3.3 Could someone out there provide some hints on how to solve this problem? Thanks in advance! With best regards, -- Dr. Mauro J. Cavalcanti E-mail: mauro...@gmail.com<mailto:mauro...@gmail.com> Web: https://github.com/maurobio "Life is complex. It consists of real and imaginary parts." -- You received this message because you are subscribed to the Google Groups "Morphmet" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet2+unsubscr...@googlegroups.com<mailto:morphmet2+unsubscr...@googlegroups.com>. To view this discussion on the web visit https://groups.google.com/d/msgid/morphmet2/CAC1JhZbXtN1tU48WgoNu45TbmM6Nmejz3PpSbB_CjMju0ejqRA%40mail.gmail.com<https://groups.google.com/d/msgid/morphmet2/CAC1JhZbXtN1tU48WgoNu45TbmM6Nmejz3PpSbB_CjMju0ejqRA%40mail.gmail.com?utm_medium=email&utm_source=footer>. -- You received this message because you are subscribed to the Google Groups "Morphmet" group. To unsubscribe from this group and stop receiving emails from it, send an email to morphmet2+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/morphmet2/CO6PR04MB8427DEFC8403EE75F4B94560A2262%40CO6PR04MB8427.namprd04.prod.outlook.com.
