Ma Lin added the comment:

You can set isolation_level = None in sqlite3.connect() parameters, then 
sqlite3 module will not begin a transaction implicitly.

Another way is disabling auto-begin-transaction temporarily:
sql.isolation_level = None
sql.execute('VACUUM')
sql.isolation_level = ''  # <- note that this is the default value of 
isolation_level

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Python tracker <rep...@bugs.python.org>
<http://bugs.python.org/issue28518>
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