I am having trouble compiling R-2.6.2 on suse linux x86_64 using the intel compiler. I read section C.2.1 Intel compilers in the R Installation and Administration manual, and put
CC=icc CFLAGS="-g -O3 -wd188 -ip" F77=ifort FFLAGS="-g -O3" ICC_LIBS=/opt/intel/cce/10.1.012/lib IFC_LIBS=/opt/intel/fce/10.1.012/lib/ LDFLAGS="-L$ICC_LIBS -L$IFC_LIBS -L/usr/lib64" CXX=icpc CXXFLAGS="-g -O3" FC=ifort FCFLAGS="-g -O3 -mp" in my config.site. Everything seems to compile alright, up until making the recommended package MASS. The output below shows that it is using gcc rather than icc when compiling the package, and the CFLAGS wd188 and ip . How do I get it to use icc for both building R and building the packages? Robert ...... make[2]: Entering directory `/opt/freewaresrc/R/R-2.6.2/src/library/Recommended' begin installing recommended package VR * Installing *source* package 'MASS' ... ** libs make[3]: Entering directory `/tmp/R.INSTALL.Z28650/VR/MASS/src' gcc -I/opt/freewaresrc/R/R-2.6.2/include -I/opt/freewaresrc/R/R-2.6.2/include -I/usr/local/include -mp -fpic -g -O3 -wd188 -ip -c lqs.c -o lqs.o gcc: unrecognized option '-wd188' cc1: error: unrecognized command line option "-ip" cc1: error: unrecognized command line option "-mp" make[3]: *** [lqs.o] Error 1 make[3]: Leaving directory `/tmp/R.INSTALL.Z28650/VR/MASS/src' ERROR: compilation failed for package 'MASS' ** Removing '/opt/freewaresrc/R/R-2.6.2/library/MASS' ** Removing '/opt/freewaresrc/R/R-2.6.2/library/class' ** Removing '/opt/freewaresrc/R/R-2.6.2/library/nnet' ** Removing '/opt/freewaresrc/R/R-2.6.2/library/spatial' make[2]: *** [VR.ts] Error 1 make[2]: Leaving directory `/opt/freewaresrc/R/R-2.6.2/src/library/Recommended' make[1]: *** [recommended-packages] Error 2 make[1]: Leaving directory `/opt/freewaresrc/R/R-2.6.2/src/library/Recommended' make: *** [stamp-recommended] Error 2 ************************************************************************ The information in this email together with any attachments is intended only for the person or entity to which it is addressed and may contain confidential and/or privileged material. Any form of review, disclosure, modification, distribution and/or publication of this email message is prohibited, unless as a necessary part of Departmental business. If you have received this message in error, you are asked to inform the sender as quickly as possible and delete this message and any copies of this message from your computer and/or your computer system network. ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.