Hi there, This is the first time I use this forum, and I want to say from the start I am not a skilled programmer. So please let me know if the question or code were unclear! I am trying to bootstrap an interaction (that is my test statistic) using the package "boot". My problem is that for every resample, I would like the randomization to be done within subjects, so that observations from different subjects are not mixed. Here is the code to generate a dataframe similar to mine:
Subject = rep(c("S1","S2","S3","S4"),4) Num = rep(c("singular","plural"),8) Gram = rep(c("gram","gram","ungram","ungram"),4) RT = c(657,775,678,895,887,235,645,916,930,768,890,1016,590,978,450,920) data = data.frame(Subject,Num,Gram,RT) This is the code I used to get the empirical interaction value: summary(lm(RT ~ Num*Gram, data=data)) As you can see, the interaction between my two factors is -348. I want to get a bootstrap confidence interval for this statistic, which I can generate using the "boot" package: #Function to create the statistic to be boostrapped boot.huber <- function(data, indices) { data <- data[indices, ] #select obs. in bootstrap sample mod <- lm(RT ~ Num*Gram, data=data) coefficients(mod) #return coefficient vector } #Generate bootstrap estimate data.boot <- boot(data, boot.huber, 1999) #Get confidence interval boot.ci(data.boot, index=4, type=c("norm", "perc", "bca"),conf=0.95) #4 gets the CI for the interaction My problem is that I think the resamples should be generated without mixing the individual subjects observations: that is, to generate the new resamples, the observations from subject 1 (S1) should be shuffled within subject 1, not mixing them with the observations from subjects 2, etc... I don't know how "boot" is doing the resampling (I read the documentation but don't understand how the function is doing it) Does anyone know how I could make sure that the resampling procedure used by "boot" respects the subject level information? Thanks a lot for your help/advice! ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.