Hi Manisha,
How about you incluse something like this on your script.R:
setwd("/your/full/working/directory") # ?setwd
save.image() # or save.image("your_workspace.RDA").
By the way, I don´t know if you added the line below to run in background:
R --save < calculate.R >& script.out
May be the rigth thing is
R --save < calculate.R > script.out &
Good luck.
miltinho
Brazil
On 6/12/08, Manisha Brahmachary <[EMAIL PROTECTED]> wrote:
>
> Hello,
>
>
>
> I have a question about running R in a cluster environment. The shell
> script
> I am running looks like this:
>
>
>
> #!/bin/bash
>
> cd /nfs/apollo/2/c2b2/users/mb0001/Data
>
>
> /nfs/apollo/1/shares/software/core_facility/local/x86_64_rocks/R/current/bin/
> R --save < calculate.R >& script.out
>
>
>
> I have used the "-save" command to save the R workspace (If, I understand
> it
> correctly) . However, I am unable to find the workspace file.
>
> Using find .RData did not help.
>
>
>
> I would be obliged if someone can help me figure out where the workspace
> file
> gets saved?
>
>
>
> Thanks
>
> manisha
>
>
>
>
>
>
>
>
>
>
>
>
>
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
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> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
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