Dear R-community
It would be nice to get some input how to find a solution for the following
error in igraph and vertex setting.
Thank you very much
Sibylle
par(bg="black")
network %>% plot(
+ vertex.color=clrs[V(.)$community],
+ vertex.size=V(.)$hub_score*1,
+ vertex.frame.color=V(.)$color,
+ vertex.label.color="white",
+ vertex.label.cex=0.5,
+ vertex.label.family="Helvetica",
+ vertex.label.font=1,
+ edge.curved=0.5,
+ edge.width= network,
+ layout=layout_with_mds(.))
Error in intI(i, n = x@Dim[1], dn[[1]], give.dn = FALSE) :
Index gr��er als maximales 6
Reproducible example:
edge_list<-read.csv("edges_table_Test.csv")
#create network and add some necessary attributes (vertices) for the plot
network <- graph_from_data_frame(aes_collapsed, directed= FALSE,
vertices = details)
temp<-cluster_optimal(network)
temp<-cbind(membership=temp$membership, Names=temp$name)
aes_collapsed <- aes_collapsed %>%
merge(temp, by="Names")
network <- network %>%
set_edge_attr(name = "type", value = factor(aes_collapsed$Names,
ordered =
is.ordered(V(network)$name))) %>%
set_edge_attr(name = "membership", value = aes_collapsed$membership) %>%
set_edge_attr(name = "color",
value = c(viridis::viridis(5))
[match(E(.)$type, c(factor(V(.)$name)))]) %>%
set_vertex_attr(name = "trans_v_net", value = c(transitivity(., type =
"local"))) %>%
set_vertex_attr(name = "hub_score", value = c(hub_score(.)$vector)) %>%
set_vertex_attr(name = "color",
value = c(viridis::viridis((5)))
[match(V(.)$name, c(factor(V(.)$name)))]) %>%
set_vertex_attr(name= "community", value=cluster_optimal(.)$membership)
clrs<-scico(3, palette = "batlow")
par(bg="black")
network %>% plot(
vertex.color=clrs[V(.)$community],
vertex.size=V(.)$hub_score*5,
vertex.frame.color=V(.)$color,
vertex.label.color="white",
vertex.label.cex=0.5,
vertex.label.family="Helvetica",
vertex.label.font=1,
edge.curved=0.5,
edge.width= network,
layout=layout_with_mds(.))
edges_table_Test.csv
Names
target
weight
B.B
A.A
4
C.C
A.A
5
D.D
A.A
5
E.E
A.A
5
F.F
A.A
1
C.C
B.B
5
E.E
B.B
1
F.F
B.B
2
A.A
C.C
5
B.B
C.C
1
D.D
C.C
5
E.E
C.C
5
F.F
C.C
3
A.A
D.D
5
B.B
D.D
1
C.C
D.D
5
E.E
D.D
5
F.F
D.D
4
A.A
E.E
5
B.B
E.E
1
C.C
E.E
4
D.D
E.E
5
F.F
E.E
5
A.A
F.F
5
B.B
F.F
1
C.C
F.F
2
D.D
F.F
3
E.E
F.F
4
F.F
F.F
5
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