Use the url at the bottom of the linked page, i.e. https://cran.r-project.org/package=ewoc
On Sun, 21 Jan 2018 at 5:06 am, Roy Mendelssohn - NOAA Federal < roy.mendelss...@noaa.gov> wrote: > Hi Márcio: > > I do not have solutions to your specific problems, but the errors do > appear to be coming from the development version of R. When you run > devtools::build_win(), run it twice, once as: > > devtools::build_win(version = "R-release") > > and once with > > devtools::build_win(version = "R-devel") > > which is then more likely to produce the CRAN results before you submit. > Also, as Henrik Bengtsson explained on this list a few weeks ago: > > > As far as I understand it, the new R-devel tests basically tests your > > package with the minimal setup of packages (a "sandboxed" .libPaths()) > > inferred from you DESCRIPTION (by excluding Suggests of the packages > > you depend on, which is where I think 'webshot' lives). > > So R-devel can give different results, and you need to make certain that > your Imports and Suggests includes anything that might not be loaded. > > Hope this helps some. > > -Roy > > > On Jan 20, 2018, at 9:47 AM, Márcio Augusto Diniz <dnz.mar...@gmail.com> > wrote: > > > > Hello all, > > > > I submitted my package ( > > https://cran.r-project.org/web/packages/ewoc/index.html) to CRAN and it > did > > not pass the automatic checks of win_builder. However, I did not have > the > > same error or warning messages when I ran devtools::win_builder() and > > devtools::run_examples() before. I had the same notes, though. > > > > See message from win_builder() CRAN: > > > > * using log directory 'd:/RCompile/CRANincoming/R-devel/ewoc.Rcheck' > > * using R Under development (unstable) (2018-01-19 r74138) > > * using platform: x86_64-w64-mingw32 (64-bit) > > * using session charset: ISO8859-1 > > * checking for file 'ewoc/DESCRIPTION' ... OK > > * checking extension type ... Package > > * this is package 'ewoc' version '0.1.1' > > * checking CRAN incoming feasibility ... NOTE > > Maintainer: 'Marcio A. Diniz <marcio.di...@cshs.org>' > > > > Found the following (possibly) invalid URLs: > > URL: https://cran.rstudio.com/web/packages/ewoc/index.html > > From: README.md > > Status: 200 > > Message: OK > > CRAN URL not in canonical form > > Canonical CRAN.R-project.org URLs use https. > > * checking package namespace information ... OK > > * checking package dependencies ... OK > > * checking if this is a source package ... OK > > * checking if there is a namespace ... OK > > * checking for hidden files and directories ... OK > > * checking for portable file names ... OK > > * checking serialized R objects in the sources ... OK > > * checking whether package 'ewoc' can be installed ... OK > > * checking installed package size ... OK > > * checking package directory ... OK > > * checking DESCRIPTION meta-information ... OK > > * checking top-level files ... OK > > * checking for left-over files ... OK > > * checking index information ... OK > > * checking package subdirectories ... OK > > * checking R files for non-ASCII characters ... OK > > * checking R files for syntax errors ... OK > > * loading checks for arch 'i386' > > ** checking whether the package can be loaded ... OK > > ** checking whether the package can be loaded with stated dependencies > ... > > OK > > ** checking whether the package can be unloaded cleanly ... OK > > ** checking whether the namespace can be loaded with stated dependencies > > ... OK > > ** checking whether the namespace can be unloaded cleanly ... OK > > ** checking loading without being on the library search path ... OK > > ** checking use of S3 registration ... OK > > * loading checks for arch 'x64' > > ** checking whether the package can be loaded ... OK > > ** checking whether the package can be loaded with stated dependencies > ... > > OK > > ** checking whether the package can be unloaded cleanly ... OK > > ** checking whether the namespace can be loaded with stated dependencies > > ... OK > > ** checking whether the namespace can be unloaded cleanly ... OK > > ** checking loading without being on the library search path ... WARNING > > Error: package or namespace load failed for 'ewoc' in namespaceExport(ns, > > exports): > > undefined exports: iter, nextElem, isplit, irnorm, irunif, irbinom, > > irnbinom, irpois, icount, idiv, ireadLines, iread.table, icountn, iapply > > In addition: Warning message: > > S3 methods 'iter.default', 'iter.iter', 'iter.matrix', 'iter.data.frame', > > 'iter.function', 'nextElem.containeriter', 'nextElem.matrixiter', > > 'nextElem.dataframeiter', 'nextElem.funiter', 'nextElem.abstractiter', > > 'as.list.iter', 'isplit.default', 'isplit.data.frame' were declared in > > NAMESPACE but not found > > Execution halted > > > > It looks like this package has a loading problem when not on .libPaths: > > see the messages for details. > > ** checking use of S3 registration ... OK > > * checking dependencies in R code ... OK > > * checking S3 generic/method consistency ... OK > > * checking replacement functions ... OK > > * checking foreign function calls ... OK > > * checking R code for possible problems ... [15s] OK > > * checking Rd files ... OK > > * checking Rd metadata ... OK > > * checking Rd line widths ... OK > > * checking Rd cross-references ... OK > > * checking for missing documentation entries ... OK > > * checking for code/documentation mismatches ... OK > > * checking Rd \usage sections ... OK > > * checking Rd contents ... OK > > * checking for unstated dependencies in examples ... OK > > * checking examples ... > > ** running examples for arch 'i386' ... [51s] NOTE > > Examples with CPU or elapsed time > 10s > > user system elapsed > > ewoc_simulation 1.65 0.01 17.4 > > ** running examples for arch 'x64' ... ERROR > > Running examples in 'ewoc-Ex.R' failed > > The error most likely occurred in: > > > >> base::assign(".ptime", proc.time(), pos = "CheckExEnv") > >> ### Name: optimal_toxicity > >> ### Title: Percent of doses in relation the optimal toxicity interval > >> ### Aliases: optimal_toxicity > >> > >> ### ** Examples > >> > >> ## Don't show: > >> DLT <- 0 > >> dose <- 30 > >> step_zero <- ewoc_d1classic(DLT ~ dose, type = 'discrete', > > + theta = 0.33, alpha = 0.25, > > + min_dose = 0, max_dose = 100, > > + dose_set = seq(0, 100, 20), > > + rho_prior = matrix(1, ncol = 2, nrow = 1), > > + mtd_prior = matrix(1, ncol = 2, nrow = 1), > > + rounding = "nearest") > > Warning in limits_d1nocov(first_dose = first_dose, last_dose = > last_dose, : > > 'first_dose' and 'last_dose' were defined as the first and last > elements > > of 'dose_set', respectively. > > Compiling model graph > > Resolving undeclared variables > > Allocating nodes > > Graph information: > > Observed stochastic nodes: 1 > > Unobserved stochastic nodes: 2 > > Total graph size: 32 > > > > Initializing model > > > >> response_sim <- response_d1classic(rho = 0.05, mtd = 20, theta = 0.33, > > + min_dose = 10, max_dose = 50) > >> pdlt_sim <- pdlt_d1classic(rho = 0.05, mtd = 20, theta = 0.33, > > + min_dose = 10, max_dose = 50) > >> sim <- ewoc_simulation(step_zero = step_zero, > > + n_sim = 1, sample_size = 2, > > + alpha_strategy = "increasing", > > + response_sim = response_sim, > > + ncores = 2) > > Error in { : task 1 failed - "could not find function "feasibility"" > > Calls: ewoc_simulation ... ewoc_simulation.ewoc_d1classic -> %dopar% -> > > <Anonymous> > > Execution halted > > * checking PDF version of manual ... OK > > * DONE > > Status: 1 ERROR, 1 WARNING, 2 NOTEs > > > > > > Any thoughts? > > > > Thank you, > > > > -- > > Márcio Diniz > > > > [[alternative HTML version deleted]] > > > > ______________________________________________ > > R-package-devel@r-project.org mailing list > > https://stat.ethz.ch/mailman/listinfo/r-package-devel > > ********************** > "The contents of this message do not reflect any position of the U.S. > Government or NOAA." > ********************** > Roy Mendelssohn > Supervisory Operations Research Analyst > NOAA/NMFS > Environmental Research Division > Southwest Fisheries Science Center > ***Note new street address*** > 110 McAllister Way > Santa Cruz, CA 95060 > Phone: (831)-420-3666 > Fax: (831) 420-3980 > e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/ > > "Old age and treachery will overcome youth and skill." > "From those who have been given much, much will be expected" > "the arc of the moral universe is long, but it bends toward justice" -MLK > Jr. > > ______________________________________________ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel