Re: [R-pkg-devel] package submission NOTE : Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

[Sebastian Meyer]

I think you got caught by a common misinterpretation of the auto-check 
output from the Debian machine. It **appends** the

Current CRAN status
at the bottom of the check log. So you see the check results for your 
submitted version and then, below, for comparison, the results for the 
package version currently on CRAN (which indeed gives the NOTE from 
checking compiled code).

Best regards,

        Sebastian Meyer


Am 15.07.21 um 11:39 schrieb Ronan GRIOT:
  Dear R developpers,
I submitted my package on the CRAN and had this NOTE :

Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’

------------------------------------------------------------------------------------------------------------------------
In my package, called APIS, I wrote 4 .c functions all included in one file
: APIS.c

To avoid that NOTE message, I ran the command
tools::package_native_routine_registration_skeleton("."), copy the output
and paste it in a mypackage_init.c file.
Here is the output of the function :

#include <stdlib.h> // for NULL
#include <R_ext/Rdynload.h>

/* FIXME:
    Check these declarations against the C/Fortran source code.
*/

/* .C calls */
extern void get_individual_mendelian_probability_2n(void *, void *, void *,
void *, void *, void *, void *, void *, void *, void *);
extern void get_individual_mendelian_probability_3n(void *, void *, void *,
void *, void *, void *, void *, void *, void *, void *);
extern void get_mendelian_probability_2n(void *, void *, void *, void *,
void *, void *, void *, void *, void *, void *, void *);
extern void get_mendelian_probability_3n(void *, void *, void *, void *,
void *, void *, void *, void *, void *, void *, void *);

static const R_CMethodDef CEntries[] = {
     {"get_individual_mendelian_probability_2n", (DL_FUNC)
&get_individual_mendelian_probability_2n, 10},
     {"get_individual_mendelian_probability_3n", (DL_FUNC)
&get_individual_mendelian_probability_3n, 10},
     {"get_mendelian_probability_2n",            (DL_FUNC)
&get_mendelian_probability_2n,            11},
     {"get_mendelian_probability_3n",            (DL_FUNC)
&get_mendelian_probability_3n,            11},
     {NULL, NULL, 0}
};

void R_init_APIS(DllInfo *dll)
{
     R_registerRoutines(dll, CEntries, NULL, NULL, NULL);
     R_useDynamicSymbols(dll, FALSE);
}

----------
then, I changed all the @useDynLib APIS by @useDynLib APIS, .registration =
TRUE as recommended in
https://stackoverflow.com/questions/42313373/r-cmd-check-note-found-no-calls-to-r-registerroutines-r-usedynamicsymbols

On my computer, it solved the problem and I do not have the NOTE message
anymore. However, during the CRAN submission process, I had this NOTE
message twice.
I do not know how to fix this as I cannot get the NOTE message on my
computer.

Regards,
Ronan

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