On 16/05/2023 12:07 p.m., Jarrett Phillips wrote:
Hi All,I'm trying to generate a `tar.gz` file on a Mac for R package submission to CRAN but am having issues. I'm using `devtools`, specifically `build()` and `install()`. My package relies on compiled code via `Rcpp/RcppArmadillo`. build("HACSim_OO") ── R CMD build ───────────────────────────────────────────────────────────────── ✔ checking for file ‘/Users/jarrettphillips/Desktop/HAC simulation/HACSim_OO/DESCRIPTION’ ... ─ preparing ‘HACSim’: ✔ checking DESCRIPTION meta-information ... ─ cleaning src ─ installing the package to process help pages ----------------------------------- ─ installing *source* package ‘HACSim’ ... ** using staged installation ** libs clang++ -arch arm64 -std=gnu++11 - I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fdiagnostics-color=always -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppArmadillo/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall -pedantic -fdiagnostics-color=always -c accumulate.cpp -o accumulate.o clang++ -arch arm64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o HACSim.so RcppExports.o accumulate.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1 -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: directory not found for option '-L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1' ld: warning: directory not found for option '-L/opt/R/arm64/gfortran/lib' ld: library not found for -lgfortran clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [HACSim.so] Error 1 ERROR: compilation failed for package ‘HACSim’ ─ removing ‘/private/var/folders/r4/xm5blbcd2tn06tjv00lm1c780000gn/T/RtmpN4uaYR/Rinstdf4219594de/HACSim’ ----------------------------------- ERROR: package installation failed Error in `(function (command = NULL, args = character(), error_on_status = TRUE, …`: ! System command 'R' failed --- Exit status: 1 stdout & stderr: <printed> --- Type .Last.error to see the more details. `clang` is installed (since I am able to run the code within my package) and I've verified by typing `gcc` in the Mac Terminal. I've also installed `Homebrew` and `gfortran`, verifying via typing in the Terminal. Any idea on what's going on how to fix the issue(s)?
You don't say how you installed gfortran, but it sounds as though you installed Homebrew's build of it. You should install the tools as available from https://mac.r-project.org/tools/.
Duncan Murdoch ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
