On Tue, 30 Jan 2024 16:24:40 +0000 Martin Morgan <mtmorgan....@gmail.com> wrote:
> BiocManager (the recommended way to install Bioconductor packages) at > the end of the day does essentially install.packages(repos = > BiocManager::repositories()), ensuring that the right versions of > Bioconductor packages are installed for the version of R in use. That's great to know, thanks! I think I will use BiocManager::install for now, both because it uses the correct repositories and because it doesn't forcibly reinstall the packages I am asking for. With bspm, I can run BiocManager::install(all_the_dependencies) and have the system perform the least amount of work required to reach the desired state. -- Best regards, Ivan ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel