Jarrett, Duncan's suggestion was correct, but you are using older R, so I'd recommend simply upgrading R to the latest release.
If you want to use old R, you have to install the older Fortran binaries that match your R version, but that's not entirely trivial so it's easier to just upgrade R instead. Cheers, Simon > On 18/05/2023, at 6:43 AM, Jarrett Phillips <phillipsjarre...@gmail.com> > wrote: > > Hi Duncan, > > I did exactly that, but still got the error above when I try building in > both RStudio via devtools::build() and the Terminal via R CMD build. > > To confirm that the right gfortran successfully installed in the correct > location, I did > > jarrettphillips@Jarretts-MacBook-Pro ~ % /opt/gfortran/bin/gfortran > > *aarch64-apple-darwin20.0-gfortran:* *fatal error: *no input files > > compilation terminated. > > > Any other ideas? > > > > > On Wed, May 17, 2023 at 2:13 PM Duncan Murdoch <murdoch.dun...@gmail.com> > wrote: > >> I think the simplest solution is to remove the gfortran you installed, >> and then install it back using the installer on >> >> https://mac.r-project.org/tools/ >> >> Duncan Murdoch >> >> On 17/05/2023 1:26 p.m., Jarrett Phillips wrote: >>> Hi Rodney, >>> >>> When I paste the directories into the Terminal, I get >>> >>> no such file or directory: >>> >>> >>> >>> suggesting that they don't exist. >>> >>> >>> Seems like I need to create them (I'm a newbie)? >>> >>> >>> What should be my next steps? >>> >>> >>> Thanks! >>> >>> >>> Cheers, >>> >>> >>> Jarrett >>> >>> >>> >>> >>> On Wed, May 17, 2023 at 1:25 PM Jarrett Phillips < >> phillipsjarre...@gmail.com> >>> wrote: >>> >>>> Hi Rodney, >>>> >>>> When I paste the directories into the Terminal, I get >>>> >>>> no such file or directory: >>>> >>>> >>>> >>>> suggesting that they don't exist. >>>> >>>> >>>> Seems like I need to create them (I'm a newbie)? >>>> >>>> >>>> What should be my next steps? >>>> >>>> >>>> Thanks! >>>> >>>> >>>> Cheers, >>>> >>>> >>>> Jarrett >>>> >>>> >>>> >>>> >>>> >>>> On Wed, May 17, 2023 at 1:07 PM Sparapani, Rodney <rspar...@mcw.edu> >>>> wrote: >>>> >>>>> Hi Jarrett: >>>>> >>>>> >>>>> >>>>> Do the two directories exist that clang is warning you about? >>>>> >>>>> >>>>> >>>>> '/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1' >>>>> '/opt/R/arm64/gfortran/lib' >>>>> >>>>> >>>>> >>>>> -- >>>>> >>>>> Rodney Sparapani, Associate Professor of Biostatistics, He/Him/His >>>>> >>>>> Director, Wisconsin Chapter of the American Statistical Association >>>>> >>>>> Institute for Health and Equity, Division of Biostatistics >>>>> >>>>> Medical College of Wisconsin, Milwaukee Campus >>>>> >>>>> >>>>> >>>>> *From: *R-SIG-Mac <r-sig-mac-boun...@r-project.org> on behalf of >> Jarrett >>>>> Phillips <phillipsjarre...@gmail.com> >>>>> *Date: *Wednesday, May 17, 2023 at 11:54 AM >>>>> *To: *r-sig-mac@r-project.org <r-sig-mac@r-project.org> >>>>> *Subject: *[R-SIG-Mac] Problems compiling with R CMD build and >>>>> devtools::build() >>>>> >>>>> ATTENTION: This email originated from a sender outside of MCW. Use >>>>> caution when clicking on links or opening attachments. >>>>> ________________________________ >>>>> >>>>> Hi All, >>>>> >>>>> I'm trying to generate a `tar.gz` file on a Mac for R package >> submission >>>>> to >>>>> CRAN but am having issues. >>>>> >>>>> I'm using `devtools`, specifically `build()` and `install()`. >>>>> >>>>> My package relies on compiled code via `Rcpp/RcppArmadillo`. >>>>> >>>>> build("HACSim_OO") >>>>> ── R CMD build >>>>> ───────────────────────────────────────────────────────────────── >>>>> ✔ checking for file ‘/Users/jarrettphillips/Desktop/HAC >>>>> simulation/HACSim_OO/DESCRIPTION’ ... >>>>> ─ preparing ‘HACSim’: >>>>> ✔ checking DESCRIPTION meta-information ... >>>>> ─ cleaning src >>>>> ─ installing the package to process help pages >>>>> ----------------------------------- >>>>> ─ installing *source* package ‘HACSim’ ... >>>>> ** using staged installation >>>>> ** libs >>>>> clang++ -arch arm64 -std=gnu++11 - >>>>> I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG >>>>> >>>>> >> -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' >>>>> >>>>> >> -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppArmadillo/include' >>>>> -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 >> -Wall >>>>> -pedantic -fdiagnostics-color=always -c RcppExports.cpp -o >> RcppExports.o >>>>> clang++ -arch arm64 -std=gnu++11 >>>>> -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG >>>>> >>>>> >> -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' >>>>> >>>>> >> -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppArmadillo/include' >>>>> -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 >> -Wall >>>>> -pedantic -fdiagnostics-color=always -c accumulate.cpp -o accumulate.o >>>>> clang++ -arch arm64 -std=gnu++11 -dynamiclib >>>>> -Wl,-headerpad_max_install_names -undefined dynamic_lookup >> -single_module >>>>> -multiply_defined suppress >> -L/Library/Frameworks/R.framework/Resources/lib >>>>> -L/opt/R/arm64/lib -o HACSim.so RcppExports.o accumulate.o >>>>> -L/Library/Frameworks/R.framework/Resources/lib -lRlapack >>>>> -L/Library/Frameworks/R.framework/Resources/lib -lRblas >>>>> -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1 >>>>> -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lquadmath >>>>> -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework >>>>> -Wl,CoreFoundation >>>>> ld: warning: directory not found for option >>>>> '-L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1' >>>>> ld: warning: directory not found for option >>>>> '-L/opt/R/arm64/gfortran/lib' >>>>> ld: library not found for -lgfortran >>>>> clang: error: linker command failed with exit code 1 (use -v >> to see >>>>> invocation) >>>>> make: *** [HACSim.so] Error 1 >>>>> ERROR: compilation failed for package ‘HACSim’ >>>>> ─ removing >>>>> >>>>> >> ‘/private/var/folders/r4/xm5blbcd2tn06tjv00lm1c780000gn/T/RtmpN4uaYR/Rinstdf4219594de/HACSim’ >>>>> ----------------------------------- >>>>> ERROR: package installation failed >>>>> Error in `(function (command = NULL, args = character(), >>>>> error_on_status = TRUE, …`: >>>>> ! System command 'R' failed >>>>> --- >>>>> Exit status: 1 >>>>> stdout & stderr: <printed> >>>>> --- >>>>> Type .Last.error to see the more details. >>>>> >>>>> `clang` is installed (since I am able to run the code within my >> package) >>>>> and I've verified by typing `gcc` in the Mac Terminal. I've also >> installed >>>>> `Homebrew` and `gfortran`, verifying via typing in the Terminal. >>>>> >>>>> Any idea on what's going on and how to fix the issue(s)? >>>>> >>>>> Thanks! >>>>> >>>>> Cheers, >>>>> >>>>> Jarrett >>>>> >>>>> P.S. - I've asked on the R package dev list and after trying a number >> of >>>>> solutions was suggested to try here as it seems to be a macOS issue. >>>>> >>>>> [[alternative HTML version deleted]] >>>>> >>>>> _______________________________________________ >>>>> R-SIG-Mac mailing list >>>>> R-SIG-Mac@r-project.org >>>>> >>>>> >> https://urldefense.com/v3/__https://stat.ethz.ch/mailman/listinfo/r-sig-mac__;!!H8mHWRdzp34!8RmbGRYgbB_f5U_CMipQjBvZqNIpC_Jg8y9_089pd69hvfqoWwH0HbRuYKPQ0QIOcyz-4Tq-j0GFysnSlDkU3GUmmA$ >>>>> < >> https://urldefense.com/v3/__https:/stat.ethz.ch/mailman/listinfo/r-sig-mac__;!!H8mHWRdzp34!8RmbGRYgbB_f5U_CMipQjBvZqNIpC_Jg8y9_089pd69hvfqoWwH0HbRuYKPQ0QIOcyz-4Tq-j0GFysnSlDkU3GUmmA$ >>> >>>>> >>>> >>> >>> [[alternative HTML version deleted]] >>> >>> _______________________________________________ >>> R-SIG-Mac mailing list >>> R-SIG-Mac@r-project.org >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac >> >> > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac > _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
