On 25.09.2023 20:46, Kirill Müller via R-SIG-Mac wrote:
Hi
The TMB package has Matrix in its LinkingTo dependencies. In a clean
package library, I see behavior posted below.
Should the TMB package have been rebuilt when a new version of the
Matrix package was pushed? More general, should we rebuild all reverse
LinkingTo dependencies of a package that gets an update on CRAN? This
will mean a lot of package rebuilds with Rcpp, but also a lot less
frustration down the road. Thanks!
As we currently do not know whether this is required, I always do that
with the Windows repositories. Nevertheless, update.packages() is not
aware of the new binaries as we do not bump the version numbers.
Something that is in discussion for a long time already, but there are
more important ToDo topics, unfortunately.
Best,
Uwe
Best regards
Kirill
dir.create("templib")
.libPaths(normalizePath("templib"))
# Sanity check
rownames(installed.packages())
#> [1] "base" "boot" "class" "cluster" "codetools"
#> [6] "compiler" "datasets" "foreign" "graphics" "grDevices"
#> [11] "grid" "KernSmooth" "lattice" "MASS" "Matrix"
#> [16] "methods" "mgcv" "nlme" "nnet" "parallel"
#> [21] "rpart" "spatial" "splines" "stats" "stats4"
#> [26] "survival" "tcltk" "tools" "utils"
packageVersion("Matrix")
#> [1] '1.5.4.1'
# Install fresh binary packages
install.packages(c("Matrix", "TMB"))
#> Installing packages into
'/private/var/folders/dj/yhk9rkx97wn_ykqtnmk18xvc0000gn/T/RtmpXIjIPy/reprex-87aa25cc1fa4-sugar-cob/templib'
#> (as 'lib' is unspecified)
#> also installing the dependencies 'Rcpp', 'RcppEigen'
#>
#> The downloaded binary packages are in
#>
/var/folders/dj/yhk9rkx97wn_ykqtnmk18xvc0000gn/T//Rtmp4GSL7m/downloaded_packages
packageVersion("Matrix")
#> [1] '1.6.1.1'
# Perform implicit consistency check
requireNamespace("TMB")
#> Loading required namespace: TMB
#> Warning in checkMatrixPackageVersion(): Package version inconsistency
detected.
#> TMB was built with Matrix version 1.6.0
#> Current Matrix version is 1.6.1.1
#> Please re-install 'TMB' from source using install.packages('TMB',
type = 'source') or ask CRAN for a binary version of 'TMB' matching
CRAN's 'Matrix' package
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