Hmm, worx4me. At least from a fresh source build.
I am suspicious of the "4.2" in a number of entries in your log, e.g.
{
"source" : "P",
"arch" : "x86_64",
"base" : 5029900288,
"size" : 3260416,
"uuid" : "c3e6d895-7059-3865-aa61-a941ea1c4569",
"path" :
"\/Library\/Frameworks\/R.framework\/Versions\/4.2\/Resources\/lib\/libR.dylib",
"name" : "libR.dylib"
},
which suggests that you may be mixing incompatible binaries. Do you have an
older private library on your search path? That has bitten me at some point.
- pd.
> On 30 Apr 2024, at 00:55 , Carl Witthoft <cello...@gmail.com> wrote:
>
> I apologize if the file posted below is the wrong log.
> I start up R 4.4.0 on my iMac 13.5.2 , type 'library(dplyr)' and r.app
> gui crashes immediately. Same for ggplot2, gert, stringr, and others .
>
> I have verified that I've updated every R library in my system. I can
> successfully load other libs, e.g., Rmpfr,knitr, MASS, so I doubt it's a
> directory or permissions problem.
>
> From the command line:
> library(dplyr)
>
> *** caught segfault ***
> address 0x406e0, cause 'memory not mapped'
>
> Traceback:
> 1: fun(libname, pkgname)
> 2: doTryCatch(return(expr), name, parentenv, handler)
> 3: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> 4: tryCatchList(expr, classes, parentenv, handlers)
> 5: tryCatch(fun(libname, pkgname), error = identity)
> 6: runHook(".onLoad", env, package.lib, package)
> 7: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck =
> vI[[j]])
> 8: asNamespace(ns)
> 9: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc,
> .libPaths()), versionCheck = vI[[j]]), i[[2L]], from = package)
> 10: loadNamespace(package, lib.loc)
> 11: doTryCatch(return(expr), name, parentenv, handler)
> 12: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> 13: tryCatchList(expr, classes, parentenv, handlers)
> 14: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <-
> loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos,
> deps, exclude, include.only)}, error = function(e) { P <- if
> (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L])
> else "" msg <- gettextf("package or namespace load failed for %s%s:\n
> %s", sQuote(package), P, conditionMessage(e)) if (logical.return
> && !quietly) message(paste("Error:", msg), domain = NA) else
> stop(msg, call. = FALSE, domain = NA)})
> 15: library(dplyr)
>
>
>
> ---- ~/library/logs/diagnosticreports file pasted below --
>
> {"app_name":"R","timestamp":"2024-04-29 11:11:39.00 -0400","app_version":"R
> 4.4.0 GUI 1.80 Big Sur Intel
> build","slice_uuid":"8311af3a-aa38-355b-acef-bbecbdb69a11","build_version":"8376","platform":1,"bundleID":"org.R-project.R","share_with_app_devs":0,"is_first_party":0,"bug_type":"309","os_version":"macOS
> 13.5.2
> (22G91)","roots_installed":0,"name":"R","incident_id":"059EF229-5343-4EE7-9843-B88A513B8019"}
>
> {
> "uptime" : 260000,
> "procRole" : "Foreground",
> "version" : 2,
> "userID" : 502,
> "deployVersion" : 210,
> "modelCode" : "iMac19,2",
> "coalitionID" : 1308,
> "osVersion" : {
> "train" : "macOS 13.5.2",
> "build" : "22G91",
> "releaseType" : "User"
> },
> "captureTime" : "2024-04-29 11:11:38.8062 -0400",
> "incident" : "059EF229-5343-4EE7-9843-B88A513B8019",
> "pid" : 55298,
> "cpuType" : "X86-64",
> "roots_installed" : 0,
> "bug_type" : "309",
> "procLaunch" : "2024-04-29 11:10:04.6528 -0400",
> "procStartAbsTime" : 261494660416425,
> "procExitAbsTime" : 261588804970703,
> "procName" : "R",
> "procPath" : "\/Applications\/R.app\/Contents\/MacOS\/R",
> "bundleInfo" : {"CFBundleShortVersionString":"R 4.4.0 GUI 1.80 Big Sur
> Intel
> build","CFBundleVersion":"8376","CFBundleIdentifier":"org.R-project.R"},
> "storeInfo" :
> {"deviceIdentifierForVendor":"415552B1-5065-5FAB-8DB9-7D60A9149E9E","thirdParty":true},
>
> "parentProc" : "launchd",
> "parentPid" : 1,
> "coalitionName" : "org.R-project.R",
> "crashReporterKey" : "CD7A5AA1-F53E-DB32-2D97-4F4C0CC4EC41",
> "codeSigningID" : "org.R-project.R",
> "codeSigningTeamID" : "VZLD955F6P",
> "codeSigningFlags" : 570491653,
> "codeSigningValidationCategory" : 6,
> "codeSigningTrustLevel" : 0,
> "wakeTime" : 1661,
> "sleepWakeUUID" : "3454232B-C5AA-4B88-A913-8D5DB632B8A8",
> "sip" : "enabled",
> "vmRegionInfo" : "0x406e0 is not in any region. Bytes before following
> region: 4486408480\n REGION TYPE START -
> END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT
> START\n---> \n __TEXT 10b6d3000-10b763000 [ 576K] r-x\/r-x
> SM=COW ...tents\/MacOS\/R",
> "exception" : {"codes":"0x0000000000000001,
> 0x00000000000406e0","rawCodes":[1,263904],"type":"EXC_BAD_ACCESS","signal":"SIGSEGV","subtype":"KERN_INVALID_ADDRESS
> at 0x00000000000406e0"},
> "termination" :
> {"flags":0,"code":11,"namespace":"SIGNAL","indicator":"Segmentation fault:
> 11","byProc":"exc handler","byPid":55298},
> "vmregioninfo" : "0x406e0 is not in any region. Bytes before following
> region: 4486408480\n REGION TYPE START -
> END [ VSIZE] PRT\/MAX SHRMOD REGION DETAIL\n UNUSED SPACE AT
> START\n---> \n __TEXT 10b6d3000-10b763000 [ 576K] r-x\/r-x
> SM=COW ...tents\/MacOS\/R",
> "extMods" :
> {"caller":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"system":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"targeted":{"thread_create":0,"thread_set_state":0,"task_for_pid":0},"warnings":0},
>
> "faultingThread" : 0,
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> 0},"r15":{"value":38277134},"rbx":{"value":1},"trap":{"value":14,"description":"(no
> mapping for user data
> read)"},"err":{"value":4},"r11":{"value":4499443912,"symbolLocation":0,"symbol":"R_BCProtTop"},"rip":{"value":5031094489,"matchesCrashFrame":1},"rbp":{"value":140701862106416},"rsp":{"value":140701862106368},"r12":{"sourceLine":418,"value":4937274544,"sourceFile":"pipe.c","symbol":"magrittr_init","symbolLocation":0},"rcx":{"value":32988},"flavor":"x86_THREAD_STATE","rdi":{"value":4937277200}},"queue":"com.apple.main-thread","frames":[{"imageOffset":1194201,"sourceFile":"names.c","symbol":"Rf_install","symbolLocation":73,"imageIndex":23},{"imageOffset":10802,"sourceLine":117,"sourceFile":"utils.c","symbol":"magrittr_init_utils","imageIndex":22,"symbolLocation":18},{"imageOffset":9411,"sourceLine":420,"sourceFile":"pipe.c","symbol":"magrittr_init","imageIndex":22,"symbolLocation":19},{"imageOffset":601270,"sourceLine":754,"sourceFile":"dotcode.c","symbol":"R_doDotCall","imageIndex":1,"symbolLocation":5686},{"imageOffset":1033939,"sourceLine":8691,"sourceFile":"eval.c","symbol":"bcEval_
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>
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> \nCoreGraphics 12K 2 \nCoreImage
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>
> --
> Carl Witthoft
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> R-SIG-Mac mailing list
> R-SIG-Mac@r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
--
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd....@cbs.dk Priv: pda...@gmail.com
_______________________________________________
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