Messages by Date
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2014/11/08
Re: [R-sig-phylo] Potential glitch in phymltest
Emmanuel Paradis
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2014/11/07
[R-sig-phylo] Potential glitch in phymltest
Luiz Max Carvalho
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2014/11/06
Re: [R-sig-phylo] Rescaling trees
Lara Budic
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2014/11/06
Re: [R-sig-phylo] Rescaling trees
Slater, Graham
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2014/11/06
Re: [R-sig-phylo] Rescaling trees
Lara Budic
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2014/11/06
Re: [R-sig-phylo] Replacement of Phybase - species tree from gene trees
Vojtěch Zeisek
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2014/11/06
Re: [R-sig-phylo] Replacement of Phybase - species tree from gene trees
Liam J. Revell
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2014/11/06
Re: [R-sig-phylo] Replacement of Phybase - species tree from gene trees
Vojtěch Zeisek
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2014/11/05
Re: [R-sig-phylo] Rescaling trees
Julien Clavel
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2014/11/05
Re: [R-sig-phylo] Rescaling trees
Liam J. Revell
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2014/11/05
Re: [R-sig-phylo] Rescaling trees
Julien Clavel
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2014/11/05
Re: [R-sig-phylo] Replacement of Phybase - species tree from gene trees
Liam J. Revell
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2014/11/05
Re: [R-sig-phylo] Replacement of Phybase - species tree from gene trees
Daniel Fulop
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2014/11/05
Re: [R-sig-phylo] Replacement of Phybase - species tree from gene trees
Vojtěch Zeisek
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2014/11/05
Re: [R-sig-phylo] Replacement of Phybase - species tree from gene trees
François Michonneau
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2014/11/05
Re: [R-sig-phylo] Rescaling trees
Lara Budic
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2014/11/05
Re: [R-sig-phylo] Replacement of Phybase - species tree from gene trees
Vojtěch Zeisek
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2014/11/05
[R-sig-phylo] Replacement of Phybase - species tree from gene trees
Vojtěch Zeisek
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2014/11/04
Re: [R-sig-phylo] Identify nodes along a pathway from root to a given tip
Manabu Sakamoto
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2014/11/04
Re: [R-sig-phylo] Read in Splitstree network in R
Simon Joly
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2014/11/04
Re: [R-sig-phylo] Identify nodes along a pathway from root to a given tip
Klaus Schliep
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2014/11/04
[R-sig-phylo] Identify nodes along a pathway from root to a given tip
Manabu Sakamoto
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2014/11/04
[R-sig-phylo] Read in Splitstree network in R
Benjamin Ward (ENV)
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2014/11/03
Re: [R-sig-phylo] dropping all but one species in each genus
Liam J. Revell
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2014/11/03
Re: [R-sig-phylo] dropping all but one species in each genus
Susan Kapust
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2014/11/03
Re: [R-sig-phylo] dropping all but one species in each genus
Liam J. Revell
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2014/11/03
Re: [R-sig-phylo] Rescaling trees
Julien Clavel
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2014/11/03
[R-sig-phylo] Rescaling trees
Lara Budic
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2014/11/03
[R-sig-phylo] dropping all but one species in each genus
Susan Kapust
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2014/11/03
Re: [R-sig-phylo] Network from gene trees
Vojtěch Zeisek
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2014/11/03
Re: [R-sig-phylo] Network from gene trees
Klaus Schliep
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2014/11/03
[R-sig-phylo] Network from gene trees
Vojtěch Zeisek
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2014/10/30
Re: [R-sig-phylo] sitewise parsimony scores with parsimony()
Klaus Schliep
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2014/10/30
[R-sig-phylo] sitewise parsimony scores with parsimony()
Rob Unckless
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2014/10/29
[R-sig-phylo] Is there an existing method for tallying relationships between 3 clades for 100s of trees?
Chris Buddenhagen
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2014/10/28
Re: [R-sig-phylo] fitDiscrete across multiple datasets
Luke Matthews
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2014/10/27
Re: [R-sig-phylo] fitDiscrete across multiple datasets
Brian O'Meara
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2014/10/27
Re: [R-sig-phylo] fitDiscrete across multiple datasets
Liam J. Revell
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2014/10/27
Re: [R-sig-phylo] fitDiscrete across multiple datasets
Benjamin Furman
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2014/10/27
Re: [R-sig-phylo] Obtaining time-scaled trees from MrBayes posterior tree block
Slater, Graham
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2014/10/27
[R-sig-phylo] Obtaining time-scaled trees from MrBayes posterior tree block
Roger Close
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2014/10/27
Re: [R-sig-phylo] fitDiscrete across multiple datasets
Luke Matthews
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2014/10/27
Re: [R-sig-phylo] fitDiscrete across multiple datasets
Liam J. Revell
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2014/10/27
Re: [R-sig-phylo] fitDiscrete across multiple datasets
Brian O'Meara
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2014/10/27
Re: [R-sig-phylo] fitDiscrete across multiple datasets
Luke Matthews
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2014/10/24
[R-sig-phylo] fitDiscrete across multiple datasets
Benjamin Furman
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2014/10/24
[R-sig-phylo] new version system for ape
Emmanuel Paradis
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2014/10/23
Re: [R-sig-phylo] Extracting sister groups
Klaus Schliep
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2014/10/23
Re: [R-sig-phylo] midpoint rooting? how to get the outgroup?
Klaus Schliep
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2014/10/23
Re: [R-sig-phylo] midpoint rooting? how to get the outgroup?
dga...@huskers.unl.edu
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2014/10/23
Re: [R-sig-phylo] Extracting sister groups
Liam J. Revell
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2014/10/23
Re: [R-sig-phylo] midpoint rooting? how to get the outgroup?
romain
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2014/10/23
Re: [R-sig-phylo] Extracting sister groups
Arbuckle, Kevin
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2014/10/23
Re: [R-sig-phylo] Extracting sister groups
François Michonneau
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2014/10/23
Re: [R-sig-phylo] Extracting sister groups
Arbuckle, Kevin
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2014/10/23
[R-sig-phylo] Extracting sister groups
Arbuckle, Kevin
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2014/10/21
[R-sig-phylo] Simulated phylogenies with character divergence
Ben Weinstein
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2014/10/21
Re: [R-sig-phylo] Simulated phylogenies with character divergence
Orme, David
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2014/10/20
[R-sig-phylo] Simulated phylogenies with character divergence
Ben Weinstein
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2014/10/20
Re: [R-sig-phylo] ape: read.nexus/write.nexus and recursive tree name expansion
Emmanuel Paradis
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2014/10/19
Re: [R-sig-phylo] ape: read.nexus/write.nexus and recursive tree name expansion
Graham Gower
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2014/10/19
[R-sig-phylo] ape: read.nexus/write.nexus and recursive tree name expansion
Graham Gower
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2014/10/17
Re: [R-sig-phylo] how to add phylogenetic tree to an existing plot
Emmanuel Paradis
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2014/10/17
Re: [R-sig-phylo] how to add phylogenetic tree to an existing plot
Liam J. Revell
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2014/10/17
[R-sig-phylo] how to add phylogenetic tree to an existing plot
Ondřej Mikula
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2014/10/12
Re: [R-sig-phylo] Antw: Re: [adegenet-forum] Isolation by distance (Mantel test)
Vojtěch Zeisek
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2014/10/09
Re: [R-sig-phylo] tip order in phylogeny - How does it work?
Klaus Schliep
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2014/10/09
Re: [R-sig-phylo] tip order in phylogeny - How does it work?
Juan Antonio Balbuena
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2014/10/09
Re: [R-sig-phylo] Plotting Posterior Probabilities from MrBayes Trees (An Update)
David Bapst
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2014/10/08
Re: [R-sig-phylo] Plotting Posterior Probabilities from MrBayes Trees (An Update)
Klaus Schliep
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2014/10/08
Re: [R-sig-phylo] Plotting Posterior Probabilities from MrBayes Trees (An Update)
David Bapst
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2014/10/08
Re: [R-sig-phylo] tip order in phylogeny - How does it work?
Brian O'Meara
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2014/10/08
[R-sig-phylo] leave
Dilek Genc
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2014/10/08
[R-sig-phylo] tip order in phylogeny - How does it work?
Juan Antonio Balbuena
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2014/10/03
Re: [R-sig-phylo] AIC scores to compare pGLS and pRMA regressions
Morhardt, Ashley
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2014/10/03
Re: [R-sig-phylo] AIC scores to compare pGLS and pRMA regressions
Matt Pennell
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2014/10/03
[R-sig-phylo] AIC scores to compare pGLS and pRMA regressions
Morhardt, Ashley
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2014/10/03
Re: [R-sig-phylo] MrBayes Trees are Misread by read.annotated.nexus() in OutbreakTools
David Bapst
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2014/10/03
Re: [R-sig-phylo] MrBayes Trees are Misread by read.annotated.nexus() in OutbreakTools
Slater, Graham
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2014/10/03
[R-sig-phylo] MrBayes Trees are Misread by read.annotated.nexus() in OutbreakTools
David Bapst
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2014/09/30
Re: [R-sig-phylo] problem dropping extinct taxa from large tree
Liam J. Revell
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2014/09/30
[R-sig-phylo] problem dropping extinct taxa from large tree
Gabriel Yedid
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2014/09/25
Re: [R-sig-phylo] Random sampling of branch lengths
Liam J. Revell
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2014/09/25
Re: [R-sig-phylo] Random sampling of branch lengths
Emmanuel Paradis
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2014/09/25
Re: [R-sig-phylo] Random sampling of branch lengths
Joseph W. Brown
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2014/09/25
[R-sig-phylo] Random sampling of branch lengths
Arbuckle, Kevin
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2014/09/24
Re: [R-sig-phylo] problem with write.nexus.data
Emmanuel Paradis
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2014/09/18
Re: [R-sig-phylo] problem with write.nexus.data
Nicholas Crouch
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2014/09/17
Re: [R-sig-phylo] problem with write.nexus.data
Liam J. Revell
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2014/09/17
[R-sig-phylo] problem with write.nexus.data
Nicholas Crouch
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2014/09/16
Re: [R-sig-phylo] R-sig-phylo Digest, Vol 80, Issue 4
Ondřej Mikula
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2014/09/16
[R-sig-phylo] points overlap in multidimensional space
Roi Holzman
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2014/09/09
[R-sig-phylo] Auto-response
Mónica Pereira
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2014/09/08
[R-sig-phylo] Generate variance-covariance matrices for each tree in a posterior distribution of trees
Johannes Björk
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2014/09/08
[R-sig-phylo] Plotting haploNet - overlapping nodes
Jostein Gohli
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2014/09/02
[R-sig-phylo] Reminder: Conference on Phylogenetic Comparative Methods in Seville
Alejandro Gonzalez
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2014/08/30
Re: [R-sig-phylo] Trying to read a tree with numerical node labels, but without edge length
Emmanuel Paradis
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2014/08/29
Re: [R-sig-phylo] Trying to read a tree with numerical node labels, but without edge length
Liam J. Revell
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2014/08/29
Re: [R-sig-phylo] Trying to read a tree with numerical node labels, but without edge length
Liam J. Revell
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2014/08/29
Re: [R-sig-phylo] Trying to read a tree with numerical node labels, but without edge length
François Michonneau
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2014/08/29
[R-sig-phylo] Trying to read a tree with numerical node labels, but without edge length
Daniel Rafael Miranda-Esquivel
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2014/08/26
[R-sig-phylo] Postdoc in computational macroevolution
Dan Rabosky
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2014/08/26
[R-sig-phylo] No p values under OU model in gls
Anna Bastian
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2014/08/21
Re: [R-sig-phylo] multiple traits measured within species and populations (Krzysztof Bartoszek)
krzysztofbartoszek
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2014/08/21
Re: [R-sig-phylo] How to test if the slope is different from 1 in PGLS?
Theodore Garland Jr
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2014/08/21
Re: [R-sig-phylo] How to test if the slope is different from 1 in PGLS?
Xavier Prudent
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2014/08/20
[R-sig-phylo] How to test if the slope is different from 1 in PGLS?
Gustavo Paterno
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2014/08/20
Re: [R-sig-phylo] multiple traits measured within species and populations
Theodore Garland Jr
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2014/08/20
[R-sig-phylo] multiple traits measured within species and populations
Jorge Sánchez Gutiérrez
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2014/08/20
Re: [R-sig-phylo] caper model comparison with different branch length transformations
Sereina Graber
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2014/08/20
Re: [R-sig-phylo] caper model comparison with different branch length transformations
Liam J. Revell
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2014/08/20
[R-sig-phylo] caper model comparison with different branch length transformations
Sereina Graber
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2014/08/19
Re: [R-sig-phylo] seemingly conflicting output from BAMM
Krzysztof Kozak
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2014/08/15
Re: [R-sig-phylo] Can't load a tree with multitomies into 'ape'
Anna Bastian
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2014/08/15
Re: [R-sig-phylo] Can't load a tree with multitomies into 'ape'
Anna Bastian
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2014/08/15
Re: [R-sig-phylo] Can't load a tree with multitomies into 'ape'
Liam J. Revell
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2014/08/15
Re: [R-sig-phylo] Can't load a tree with multitomies into 'ape'
François Michonneau
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2014/08/15
[R-sig-phylo] Can't load a tree with multitomies into 'ape'
Anna Bastian
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2014/08/14
Re: [R-sig-phylo] seemingly conflicting output from BAMM
Dan Rabosky
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2014/08/14
Re: [R-sig-phylo] seemingly conflicting output from BAMM
Jonathan Chang
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2014/08/14
Re: [R-sig-phylo] convergence in compar.gee (ape)
Emmanuel Paradis
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2014/08/12
Re: [R-sig-phylo] Colouring node pies according to a discrete character.
Liam J. Revell
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2014/08/12
[R-sig-phylo] Colouring node pies according to a discrete character.
Ferguson-Gow, Henry
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2014/08/12
[R-sig-phylo] convergence in compar.gee (ape)
Sereina Graber
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2014/08/11
[R-sig-phylo] REpost (in plain text ascii): hierarchical model with phylogenetic dependence term
Edwin Lebrija Trejos
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2014/08/11
[R-sig-phylo] hierarchical model with phylogenetic dependence term
Edwin Lebrija Trejos
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2014/08/07
Re: [R-sig-phylo] PGLS - I have more taxa in my data set than in my phylogeny
Giulio V. Dalla Riva
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2014/08/07
Re: [R-sig-phylo] null model to trait evolution
Slater, Graham
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2014/08/07
[R-sig-phylo] null model to trait evolution
Viviane Deslandes
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2014/08/07
[R-sig-phylo] PGLS - I have more taxa in my data set than in my phylogeny
Anna Bastian
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2014/08/06
[R-sig-phylo] ASR under split model
Frenzke
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2014/07/27
Re: [R-sig-phylo] questions about plotting a tree
Ivett Pipoly
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2014/07/27
Re: [R-sig-phylo] questions about plotting a tree
Liam J. Revell
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2014/07/27
Re: [R-sig-phylo] questions about plotting a tree
Ivett Pipoly
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2014/07/27
Re: [R-sig-phylo] questions about plotting a tree
Emmanuel Paradis
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2014/07/25
Re: [R-sig-phylo] saving trees without branch lengths?
john d
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2014/07/25
Re: [R-sig-phylo] saving trees without branch lengths?
Liam J. Revell
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2014/07/25
[R-sig-phylo] saving trees without branch lengths?
john d
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2014/07/25
Re: [R-sig-phylo] questions about plotting a tree
Liam J. Revell
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2014/07/25
Re: [R-sig-phylo] questions about plotting a tree
Eliot Miller
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2014/07/25
Re: [R-sig-phylo] simulating multiple continuous traits using geiger
krzysztofbartoszek
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2014/07/25
[R-sig-phylo] simulating multiple continuous traits using geiger
Kaspar Delhey
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2014/07/24
[R-sig-phylo] questions about plotting a tree
Ivett Pipoly
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2014/07/23
Re: [R-sig-phylo] Phylogenetic signal in MCMCglmm
Daniel Fulop
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2014/07/23
Re: [R-sig-phylo] Phylogenetic signal in MCMCglmm
Shinichi Nakagawa
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2014/07/23
Re: [R-sig-phylo] Phylogenetic signal in MCMCglmm
Daniel Fulop
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2014/07/23
[R-sig-phylo] Unexpected error in 'chronos' ('ape' package)
MIGUEL ANGEL.FERNANDEZ.MARTINEZ.610608
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2014/07/19
[R-sig-phylo] place node labels on dated tree to be read by FigTree
Ruhfel Brad
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2014/07/18
Re: [R-sig-phylo] Interaction effects in PGLS
Kaspar Delhey
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2014/07/18
[R-sig-phylo] Interaction effects in PGLS
Sereina Graber
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2014/07/15
Re: [R-sig-phylo] use R to download the DNA barcode sequence of a list, of species from GenBank
Mario Suárez
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2014/07/15
[R-sig-phylo] MCMC output with multiple peaks
Frenzke
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2014/07/15
Re: [R-sig-phylo] use R to download the DNA barcode sequence of a list, of species from GenBank
cheny...@hotmail.com
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2014/07/14
Re: [R-sig-phylo] use R to download the DNA barcode sequence of a list, of species from GenBank
Eugen
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2014/07/14
Re: [R-sig-phylo] Fw: Re: use R to download the DNA barcode sequence of a list of species from GenBank
cheny...@hotmail.com
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2014/07/14
Re: [R-sig-phylo] Fw: Re: use R to download the DNA barcode sequence of a list of species from GenBank
David Winter
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2014/07/14
Re: [R-sig-phylo] phylogenetic multiple regression of plant growth
krzysztofbartoszek
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2014/07/14
Re: [R-sig-phylo] [adegenet-forum] Not working Monmonier
Vojtěch Zeisek
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2014/07/14
Re: [R-sig-phylo] [adegenet-forum] Not working Monmonier
Jombart, Thibaut
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2014/07/14
Re: [R-sig-phylo] [adegenet-forum] Not working Monmonier
Vojtěch Zeisek
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2014/07/13
[R-sig-phylo] Fw: Re: use R to download the DNA barcode sequence of a list of species from GenBank
cheny...@hotmail.com
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2014/07/13
Re: [R-sig-phylo] use R to download the DNA barcode sequence of a list of species from GenBank
Karolis Ramanauskas
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2014/07/13
[R-sig-phylo] use R to download the DNA barcode sequence of a list of species from GenBank
cheny...@hotmail.com
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2014/07/10
[R-sig-phylo] phylogenetic multiple regression of plant growth
Daniel Fulop
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2014/07/09
Re: [R-sig-phylo] pre-release of pegas 0.6
Jombart, Thibaut
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2014/07/08
[R-sig-phylo] pre-release of pegas 0.6
Emmanuel Paradis
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2014/07/08
Re: [R-sig-phylo] Why "dist.nodes" do no work if I use long tree?
Klaus Schliep
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2014/07/08
[R-sig-phylo] Why "dist.nodes" do no work if I use long tree?
Alexey Fomin
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2014/07/07
[R-sig-phylo] Pearson correlation and tree structure
Inigo Masters
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2014/07/06
Re: [R-sig-phylo] PGLS: residuals vs. phyres
Liam J. Revell
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2014/07/06
[R-sig-phylo] PGLS: residuals vs. phyres
Sereina Graber
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2014/07/06
[R-sig-phylo] Whether exists in "R" the output of result in a file?
Alexey Fomin
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2014/07/04
[R-sig-phylo] Error in all.branches.matrix with Bisse models
Frenzke
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2014/07/02
Re: [R-sig-phylo] Stochastic mapping & discrete characters
Naama Kopelman
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2014/07/01
[R-sig-phylo] REMINDER: Phylogenetic methods and the fossil record GSA Vancouver 2014 topical session
James Lamsdell
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2014/07/01
Re: [R-sig-phylo] Stochastic mapping & discrete characters
Liam J. Revell
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2014/07/01
[R-sig-phylo] Stochastic mapping & discrete characters
Naama Kopelman
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2014/07/01
[R-sig-phylo] hypothesis-testing help: trees and leave characters
Inigo Masters
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2014/06/27
Re: [R-sig-phylo] Extract lambda from compare.gee model
Liam J. Revell
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2014/06/27
[R-sig-phylo] Extract lambda from compare.gee model
Cody Dey
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2014/06/26
Re: [R-sig-phylo] negative lambda
Orme, David
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2014/06/26
Re: [R-sig-phylo] Pegas Tajimas Test
Emmanuel Paradis
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2014/06/25
Re: [R-sig-phylo] Pegas Tajimas Test
Vojtěch Zeisek
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2014/06/25
[R-sig-phylo] Pegas Tajimas Test
Peters, Stuart
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2014/06/24
Re: [R-sig-phylo] negative lambda
Luke Matthews
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2014/06/24
[R-sig-phylo] warning MCMC: In log(sum(root.p * d.root)) : NaNs produced
Frenzke
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2014/06/23
Re: [R-sig-phylo] negative lambda when using "ape" package
Renata Brandt
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2014/06/19
[R-sig-phylo] Search for the presence of a topology in a given tree?
Cacau Centurion
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2014/06/19
[R-sig-phylo] plotting arrows (or triangles) at nodes during ancestral state reconstruction
Agus Camacho
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2014/06/19
[R-sig-phylo] Error in fitDiscrete
Frenzke
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2014/06/17
Re: [R-sig-phylo] why a raster generated from a set of coordinates leaves some coordinates outside it?
Agus Camacho
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2014/06/15
[R-sig-phylo] Very long tree.
Alexey Fomin
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2014/06/12
[R-sig-phylo] Errors with tree construct by [ape]
Zhou, K (mmb)
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2014/06/11
[R-sig-phylo] why a raster generated from a set of coordinates leaves some coordinates outside it?
Agus Camacho
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2014/06/10
[R-sig-phylo] Tree-for-all hackathon
Brian O'Meara
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2014/06/10
[R-sig-phylo] Root-to-tip regression
Rosemary McCloskey
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2014/06/10
Re: [R-sig-phylo] Triploid microsatellites?
Vojtěch Zeisek
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2014/06/10
Re: [R-sig-phylo] edge color in phylomorphospace3d
Paolo Piras
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2014/06/10
Re: [R-sig-phylo] edge color in phylomorphospace3d
Liam J. Revell
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2014/06/10
Re: [R-sig-phylo] Triploid microsatellites?
Vojtěch Zeisek