Hi Thanks guys.
Attached are the two files (will these work via the list?) When I type trackback() all I get is 1: date.phylo(archotreeresolved, ages, rlen = 1, method = "equal"). Roland On Thu, Jul 21, 2011 at 1:24 PM, Klaus Schliep <klaus.schl...@gmail.com>wrote: > Dear Roland, > > it would be good if you add the datasets, that one can reproduce your > results (archotreeresolved, ages). I would guess from the error > message that your ages list may has the wrong format. > Also traceback() sometimes tells you where the error happens exactly. > > Kind regards > Klaus > > On 7/21/11, Roland Sookias <r.sook...@gmail.com> wrote: > > Hi all > > > > I'm trying to assign lengths to branches in a tree using the Ruta et al. > > 2008 method via Graeme Lloyd's date.phylo() function (see > > http://www.graemetlloyd.com/methdpf.html). I keep coming up against an > error > > for some reason. Graeme himself does exactly the same thing seemingly on > his > > Mac (I'm using Windows 7, R 2.13.1, Ape 2.7-2 - Graeme has Ape 2.7-1) and > it > > works. I've tried various permutations of the tree, with and without a > > rooted symbol [&r], and there are no special characters etc., the names > in > > tree and ages list are the same. I still keep getting: > > > > ttree<-date.phylo(archotreeresolved, ages, rlen=1, method="equal") > > Error in ages[tree$tip.label[find.descendants(nodes[i], tree)], 1] : > > incorrect number of dimensions > > > > Any help, or advice what to try/look into much appreciated. Graeme thinks > > it's something with ape not date.phylo... > > > > Very best > > > > Roland > > > > [[alternative HTML version deleted]] > > > > _______________________________________________ > > R-sig-phylo mailing list > > R-sig-phylo@r-project.org > > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > > > > > -- > Klaus Schliep > Université Paris 6 (Pierre et Marie Curie) > 9, Quai Saint-Bernard, 75005 Paris >
archotreeresolved6.tre
Description: Binary data
Abrictosaurus_consors,195.8 Aetosauroides_scagliai,225.5 Aetosaurus_ferratus,210 Afrovenator_abakensis,160.75 Agilisaurus_louderbacki,170 Anchisaurus_polyzelus,188.8 Antetonitrus_ingenipes,208.8 Archeopelta_arborensis,234.5 Archosaurus_rossicus,265.5 Asilisaurus_kongwe,243 Atlasaurus_imelakei,164.5 Austriadactylus_cristatus,210 Barapasaurus_tagorei,188.8 Batrachotomus_kupferzellensis,238 Bellusaurus_sui,164.5 Berberosaurus_liassicus,183 Callovosaurus_leedsi,163 Camelotia_borealis,202.8 Campylognathoides_liasicus,179.5 Campylognathoides_zitteli,179.5 Cetiosaurus_oxoniensis,168.5 Chanaresuchus_bonapartei,234.5 Chindesaurus_bryansmalli,218.3 Chuandongocoelurus_primitivus,170 Coahomasuchus_kahleorum,216 Coelophysis_bauri,208.8 Coelophysis_kayentakatae,190 Coelophysis_rhodesiensis,195.8 Condorraptor_currumili,163 Cryolophosaurus_ellioti,188.8 Darwinopterus_modularis,159.5 Desmatosuchus_smalli,210 Dilophosaurus_wetherilli,190 Dimorphodon_macronyx,195.8 Dolabrosaurus_aquatilis,208.8 Dorygnathus_banthensis,179.5 Doswellia_kaltenbachi,231.5 Drepanosaurus_unguicaudatus,210 Dromomeron_gregorii,216 Dromomeron_romeri,208.8 Duriavenator_hesperis,170 Effigia_okeeffeae,208.8 Efraasia_minor,210 Eocursor_parvus,208.8 Eoraptor_lunensis,231.5 Epidendrosaurus_ningchengensis,159.5 Epidexipteryx_hui,159.5 Erythrosuchus_africanus,243 Eucoelophysis_baldwini,208.8 Eudimorphodon_cromptonellus,210 Eudimorphodon_ranzii,210 Euparkeria_capensis,243 Eustreptospondylus_oxoniensis,163 Fasolasuchus_tenax,208.8 Gongxianosaurus_shibeiensis,188.8 Herrerasaurus_ischigualastensis,231.5 Hesperosuchus_agilis,216 Heterodontosaurus_tucki,195.8 Hexinlusaurus_multidens,170 Howesia_browni,243 Huayangosaurus_taibaii,170 Hyperodapedon_gordoni,225.5 Hypuronector_limnaios,222 Isanosaurus_attavipachi,208.8 Jeholopterus_ningchengensis,159.5 Jingshanosaurus_xinwaensis,195.8 Kayentasuchus_walkeri,190 Lagerpeton_chanarensis,234.5 Langobardisaurus_pandolfi,210 Langobardisaurus_tonelloi,210 Leptosuchus_adamanensis,216 Leptosuchus_crosbiensis,222 Lesothosaurus_diagnosticus,195.8 Lewisuchus_admixtus,234.5 Liliensternus_liliensterni,210 Loricatosaurus_priscus,163 Lufengosaurus_huenei,195.8 Lycorhinus_angustidens,195.8 Macrocnemus_bassanii,240 Magnosaurus_nethercombensis,170 Marasuchus_lilloensis,234.5 Massospondylus_carinatus,195.8 Megalancosaurus_endennae,216 Megalancosaurus_preonensis,216 Megalosaurus_bucklandii,166.5 Melanorosaurus_readi,214.8 Melanorosaurus_thabanensis,195.8 Mesosuchus_browni,243 Monolophosaurus_jiangi,166.5 Mystriosuchus_planirostris,210 Omeisaurus_tianfuensis,170 Ornithosuchus_longidens,225.5 Orthosuchus_stormbergi,195.8 Panphagia_protos,231.5 Patagosaurus_fariasi,163 Peteinosaurus_zambelli,210 Piatnitzkysaurus_floresi,163 Pisanosarus_mertii,231.5 Plateosauravus_cullingworthi,208.8 Plateosaurus_engelhardti,208.8 Poposaurus_gracilis,219.5 Postosuchus_kirkpatricki,214.8 Preondactylus_buffarinii,210 Prestosuchus_chiniquensis,234.5 Prolacerta_broomi,248 Protorosaurus_speneri,265.5 Protosuchus_haughtoni,195.8 Protosuchus_richardsoni,199.3 Pseudopalatus_buceros,208.8 Qianosuchus_mixtus,243 Revueltosaurus_callanderi,214.8 Rhynchosaurus_anticeps,243 Riojasaurus_incertus,208.8 Riojasuchus_tenuisceps,208.8 Ruehleia_bedheimensis,210 Rutiodon_carolinensis,222 Sacisaurus_agudoensis,210 Saturnalia_tupiniquim,225.5 Saurosuchus_galilei,231.5 Scelidosaurus_harrisonii,193.5 Scleromochlus_taylori,225.5 Scutellosaurus_lawleri,190 Shansisuchus_shansisuchus,243 Shunosaurus_lii,170 Silesaurus_opolensis,231.5 Sillosuchus_longicervix,231.5 Smilosuchus_gregorii,222 Staurikosaurus_pricei,231.5 Stormbergia_dangershoeki,195.8 Tawa_hallae,208.8 Tazoudasaurus_naimi,183 Terrestrisuchus_gracilis,202.8 Teyumbaita_sulcognathus,210 Thecodontosaurus_antiquus,202.8 Ticinosuchus_ferox,243 Tropidosuchus_romeri,234.5 Typothorax_coccinarum,214.8 Vallesaurus_cenensis,210 Vallesaurus_zorzinensis,210 Vjushkovia_triplicostata,247.5 Vulcanodon_karibaensis,188.8 Yunannosaurus_huangi,195.8 Zupaysaurus_rougieri,208.8
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