Author: bugman
Date: Thu Jul 20 09:08:09 2006
New Revision: 2521

URL: http://svn.gna.org/viewcvs/relax?rev=2521&view=rev
Log:
Fixed the Clore 1990 reference in the manual, changed the rsync command in the 
release checklist,
and updated the manual.


Modified:
    1.2/docs/Release_Checklist
    1.2/docs/latex/docstring.tex
    1.2/docs/latex/model-free.tex
    1.2/docs/relax.pdf

Modified: 1.2/docs/Release_Checklist
URL: 
http://svn.gna.org/viewcvs/relax/1.2/docs/Release_Checklist?rev=2521&r1=2520&r2=2521&view=diff
==============================================================================
--- 1.2/docs/Release_Checklist (original)
+++ 1.2/docs/Release_Checklist Thu Jul 20 09:08:09 2006
@@ -33,7 +33,7 @@
 
 * Move the distribution files and their signatures, as well as the PDF manual, 
to the mirror directory for the relax download site.  This directory should 
contain all the files and directories accessible from 
'http://download.gna.org/relax/'.  Rsync the entire directory contents to 
download.gna.org/upload/relax/ using the command
 
-$ rsync --delete -avr --rsh="ssh" * [EMAIL PROTECTED]:/upload/relax/
+$ rsync --delete -av --rsh="ssh" . [EMAIL PROTECTED]:/upload/relax/
 
 
 

Modified: 1.2/docs/latex/docstring.tex
URL: 
http://svn.gna.org/viewcvs/relax/1.2/docs/latex/docstring.tex?rev=2521&r1=2520&r2=2521&view=diff
==============================================================================
--- 1.2/docs/latex/docstring.tex (original)
+++ 1.2/docs/latex/docstring.tex Thu Jul 20 09:08:09 2006
@@ -789,7 +789,7 @@
  \toprule 
   Data type & Object name & Patterns  \\ 
  \midrule 
-  Local $\tau_m$ & \quotecmd{tm} & \quotecmd{\^{}tm\$} or \quotecmd{local\_tm} 
 \\
+  Local $\tau_m$ & \quotecmd{local\_tm} & \quotecmd{[Ll]ocal[ -\_]tm}  \\
    &  &   \\
   Order\index{order parameter} parameter $S^2$ & \quotecmd{s2} & 
\quotecmd{\^{}[Ss]2\$}  \\
    &  &   \\
@@ -1132,7 +1132,7 @@
  \toprule 
   Data type & Object name & Patterns  \\ 
  \midrule 
-  Local $\tau_m$ & \quotecmd{tm} & \quotecmd{\^{}tm\$} or \quotecmd{local\_tm} 
 \\
+  Local $\tau_m$ & \quotecmd{local\_tm} & \quotecmd{[Ll]ocal[ -\_]tm}  \\
    &  &   \\
   Order\index{order parameter} parameter $S^2$ & \quotecmd{s2} & 
\quotecmd{\^{}[Ss]2\$}  \\
    &  &   \\
@@ -5727,7 +5727,7 @@
  \toprule 
   Data type & Object name & Patterns  \\ 
  \midrule 
-  Local $\tau_m$ & \quotecmd{tm} & \quotecmd{\^{}tm\$} or \quotecmd{local\_tm} 
 \\
+  Local $\tau_m$ & \quotecmd{local\_tm} & \quotecmd{[Ll]ocal[ -\_]tm}  \\
    &  &   \\
   Order\index{order parameter} parameter $S^2$ & \quotecmd{s2} & 
\quotecmd{\^{}[Ss]2\$}  \\
    &  &   \\
@@ -5873,7 +5873,7 @@
  \toprule 
   Data type & Object name & Patterns  \\ 
  \midrule 
-  Local $\tau_m$ & \quotecmd{tm} & \quotecmd{\^{}tm\$} or \quotecmd{local\_tm} 
 \\
+  Local $\tau_m$ & \quotecmd{local\_tm} & \quotecmd{[Ll]ocal[ -\_]tm}  \\
    &  &   \\
   Order\index{order parameter} parameter $S^2$ & \quotecmd{s2} & 
\quotecmd{\^{}[Ss]2\$}  \\
    &  &   \\
@@ -6054,7 +6054,7 @@
  \toprule 
   Data type & Object name & Patterns  \\ 
  \midrule 
-  Local $\tau_m$ & \quotecmd{tm} & \quotecmd{\^{}tm\$} or \quotecmd{local\_tm} 
 \\
+  Local $\tau_m$ & \quotecmd{local\_tm} & \quotecmd{[Ll]ocal[ -\_]tm}  \\
    &  &   \\
   Order\index{order parameter} parameter $S^2$ & \quotecmd{s2} & 
\quotecmd{\^{}[Ss]2\$}  \\
    &  &   \\
@@ -6320,7 +6320,7 @@
  \toprule 
   Data type & Object name & Patterns  \\ 
  \midrule 
-  Local $\tau_m$ & \quotecmd{tm} & \quotecmd{\^{}tm\$} or \quotecmd{local\_tm} 
 \\
+  Local $\tau_m$ & \quotecmd{local\_tm} & \quotecmd{[Ll]ocal[ -\_]tm}  \\
    &  &   \\
   Order\index{order parameter} parameter $S^2$ & \quotecmd{s2} & 
\quotecmd{\^{}[Ss]2\$}  \\
    &  &   \\
@@ -6352,7 +6352,7 @@
  \toprule 
   Data type & Object name & Value  \\ 
  \midrule 
-  Local $\tau_m$ & \quotecmd{tm} & 10 * 1e-9  \\
+  Local $\tau_m$ & \quotecmd{local\_tm} & 10 * 1e-9  \\
    &  &   \\
   Order\index{order parameter} parameters $S^2$, $S^2_f$, and $S^2_s$ & 
\quotecmd{s2}, \quotecmd{s2f}, \quotecmd{s2s} & 0.8  \\
    &  &   \\
@@ -6694,7 +6694,7 @@
  \toprule 
   Data type & Object name & Patterns  \\ 
  \midrule 
-  Local $\tau_m$ & \quotecmd{tm} & \quotecmd{\^{}tm\$} or \quotecmd{local\_tm} 
 \\
+  Local $\tau_m$ & \quotecmd{local\_tm} & \quotecmd{[Ll]ocal[ -\_]tm}  \\
    &  &   \\
   Order\index{order parameter} parameter $S^2$ & \quotecmd{s2} & 
\quotecmd{\^{}[Ss]2\$}  \\
    &  &   \\

Modified: 1.2/docs/latex/model-free.tex
URL: 
http://svn.gna.org/viewcvs/relax/1.2/docs/latex/model-free.tex?rev=2521&r1=2520&r2=2521&view=diff
==============================================================================
--- 1.2/docs/latex/model-free.tex (original)
+++ 1.2/docs/latex/model-free.tex Thu Jul 20 09:08:09 2006
@@ -81,7 +81,7 @@
     \Bigg),
 \end{equation}
 
-\noindent where $S^2$ is the square of the Lipari and Szabo generalised order 
parameter and $\tau_e$ is the effective correlation time.  The order parameter 
reflects the amplitude of the motion and the correlation time in an indication 
of the time scale of that motion.  The theory was extended by \citet{Clore90} 
by the modelling of two independent internal motions using the equation
+\noindent where $S^2$ is the square of the Lipari and Szabo generalised order 
parameter and $\tau_e$ is the effective correlation time.  The order parameter 
reflects the amplitude of the motion and the correlation time in an indication 
of the time scale of that motion.  The theory was extended by \citet{Clore90a} 
by the modelling of two independent internal motions using the equation
 \begin{multline} \label{eq: J(w) model-free ext generic}
     J(\omega) = \frac{2}{5} \sum_{i=-k}^k c_i \cdot \tau_i \Bigg(
         \frac{S^2}{1 + (\omega \tau_i)^2}

Modified: 1.2/docs/relax.pdf
URL: 
http://svn.gna.org/viewcvs/relax/1.2/docs/relax.pdf?rev=2521&r1=2520&r2=2521&view=diff
==============================================================================
Binary files - no diff available.


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