Author: bugman
Date: Wed Oct 7 17:48:03 2015
New Revision: 28019
URL: http://svn.gna.org/viewcvs/relax?rev=28019&view=rev
Log:
Partial update of the CHANGES file for relax 4.0.0.
This consists of only the recent changes in the trunk, all of the branch
changes are yet to be
added.
Modified:
tags/4.0.0/docs/CHANGES
Modified: tags/4.0.0/docs/CHANGES
URL:
http://svn.gna.org/viewcvs/relax/tags/4.0.0/docs/CHANGES?rev=28019&r1=28018&r2=28019&view=diff
==============================================================================
--- tags/4.0.0/docs/CHANGES (original)
+++ tags/4.0.0/docs/CHANGES Wed Oct 7 17:48:03 2015
@@ -1,3 +1,65 @@
+Version 4.0.0
+(7 October 2015, from /trunk)
+http://svn.gna.org/svn/relax/tags/4.0.0
+
+ Features:
+ N/A
+
+
+ Changes:
+ * Added a patch file for fixing Epydoc version 3.0.1. This is needed
to allow the dot graph files names to be unique (by no longer truncating to 30
characters), and to allow epydoc to handle newer Graphvis versions.
+ * Improvements for the release checklist document. The backporting of
the CHANGES file to trunk is now more obvious, and instructions for fixing
Epydoc have been added.
+ * Clean up of some of the release instructions (for using vim).
+ * Added error catching to the find_unused_imports.py developer script.
+ * Fix for the error catching in the find_unused_imports.py developer
script. The numerous pylint warnings are also sent to STDERR.
+ * Removed the printout of pylint STDERR messages in the
find_unused_imports.py developer script.
+ * Elimination of a number of wildcard imports from some frame order
timing scripts. This is to avoid excessive function imports.
+ * Removal of an unused import from the user_functions.frame_order
module.
+ * Removal of unused imports from the
test_suite/shared_data/frame_order/simulation scripts.
+ * Updated some unused frame order scripts to use the new minimise user
function design.
+ * Unused import clean up in the
test_suite/shared_data/curve_fitting/numeric_topology directory. All the
scripts in this directory have been cleaned up to remove unused imports. In
one case, commented out code was replaced with an 'if 0:' statement to silence
the unused import warnings from the devel_scripts/find_unused_imports.py script.
+ * Unused import clean up in the
test_suite/shared_data/curve_fitting/profiling directory. The scripts in this
directory have been cleaned up to remove unused imports.
+ * Added an exception system to the find_unused_imports.py developer
script. Sometimes pylint will give an "Unused import" warning for imports that
are needed by the module. Therefore an exception list of the file name and
module has been created to skip these warnings. The list covers the dep_check
module and all of the profiling_*.py scripts in the directory
test_suite/shared_data/dispersion/profiling/.
+ * Added a copyright notice to the find_unused_imports.py development
script. This is mainly to indicate how out of date the script will be in the
future.
+ * A directory can now be supplied on the command line for the
find_unused_imports.py devel script.
+ * Changed the imports in the test_monte_carlo_mean.py script. This
inconsequential change is to avoid false positives from the
find_unused_imports.py devel script.
+ * Modifications of the test suite script for calculating synthetic
CPMG data. The imports in cpmg_synthetic.py are now all used, rather than
being commented out. This allows the find_unused_imports.py devel script to
pass.
+ * Unused import cleanup of all scripts in the
test_suite/shared_data/dispersion/ directories. This both removes unused
imports, or uncomments but deactivates temporarily unused code.
+ * Removed unused imports from the scripts in the
test_suite/shared_data/frame_order subdirectories.
+ * Removed unused imports from the Spectrum system test base module.
+ * Removed unused imports from the Relax_disp system test base module.
+ * Clean up of all unused imports in the system test scripts.
+ * Removed unused imports from the Structure system test base module.
+ * Changed how the import of lib.regex in the Test_regex unit tests is
used. The module is no longer stored in the TestCase class namespace, but is
rather called directly within the unit test.
+ * Changed the import of pipe_control.state in the test_state unit test
module.
+ * Removed unused imports from the unit tests.
+ * Added another exception to the find_unused_imports.py devel script.
This is for the test_suite.unit_tests._lib._geometry.test_rotations module
which programatically obtains the imports using globals().
+ * Added a workaround or hack for exceptions for circular imports in
the find_unused_imports.py script. This is currently for the
test_suite.unit_tests._lib.test___init__ and
test_suite.unit_tests._lib._geometry.test___init__ modules.
+ * Removal of unused imports from the GUI test modules.
+ * Removed all unused imports from the pipe_control package.
+ * Added import exceptions for the lib.compat module in the
find_unused_imports.py devel script.
+ * Added import exceptions for the lib.xml module in the
find_unused_imports.py devel script. These are needed because of eval()
function calls on XML stored Python data structures.
+ * Removed all unused imports from the relax library package.
+ * Removed all unused imports from the target_functions package.
+ * Removed unused imports from the developer scripts.
+ * Removed all unused imports from the specific_analyses package.
+ * Removed all unused imports from the auto_analyses package.
+ * Removed all unused imports from the numdifftools extern package.
+ * Removal of the last unused import from the target_functions package.
+ * Fix for the PCS system tests on old Python versions. The
self.assertAlmostEqual() function cannot compare None values in earlier Python
versions.
+ * MS Windows fix for the Frame_order.test_generate_rotor2_distribution
system test. The locale.setlocale() function call for correctly setting up a
spinning progress meter was failing on MS Windows. The error is now caught and
the local setting skipped.
+ * Added Python 3.5 to the manual C module compilation script.
+ * Added Python 3.5 to the Python multiversion test suite script.
+ * Changes to the introduction of the frame order theory chapter of the
manual.
+
+
+ Bugfixes:
+ * Fix for the alignment tensor MC simulation objects in the data store
for Python 3.1. The sim_indices object was sometimes created with the range()
method, however the returned iterator does not possess an index() function in
Python 3.1. Therefore it was converted to a standard list.
+ * Cosmetic bug fix for the running of the test suite in the GUI. The
list of skipped tests in the status object was not being reinitialised for each
run of the test suite. This only affects the GUI where the tests can be run
multiple times. The result was that the list of skipped tests was always being
printed out, even if no tests were skipped.
+ * Fix for the numpy version number checking in the dep_check module.
The version_comparison() function is now being used to compare numbers,
replacing the previous hack.
+
+
+
Version 3.3.9
(30 September 2015, from /trunk)
http://svn.gna.org/svn/relax/tags/3.3.9
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