Hi Edward, OK, I finally managed to create a bug report on gna with attached example.
On 04/22/2016 02:59 PM, Edward d'Auvergne wrote: > Hi Petr, > > Welcome to the relax mailing lists! For your problem, what does relax > say if you run the analysis with missing residues? Could you copy and > paste the full output? Cheers. We have written the software to > specifically handle this situation, and this should be automatic. For > the relax developers reading this, for reference you can see this as > the "missing" argument for the target function __init__() setup method > at: > > > http://www.nmr-relax.com/api/4.0/target_functions.relax_disp-pysrc.html#Dispersion.__init__ > > If you see an error message, then this is a bug. relax is designed to > handle every situation automatically - you should never, ever have to > revert to such tricks to get relax to work. If you do see an error, > it would be appreciated if you could create a bug report about the > problem at: > > https://gna.org/bugs/?func=additem&group=relax > > Ideally, if you could attach a script and truncated data files (with > maximally 2-3 residues, slightly randomised, if you wish), that would > be appreciated. If the problem can be quickly reproduced with the > attached files, then I can convert that in to a relax system test. I > normally then only need 5-10 minutes to eliminate such a bug. > > Cheers, > > Edward > > > > > > > On 22 April 2016 at 14:18, Petr Padrta <pad...@ncbr.muni.cz> wrote: >> Hello everybody, >> >> I'm analysing some CPMG data with the auto-analysis script >> (sample_scripts/relax_disp/cpmg_analysis.py). Problem is that I don't have >> the >> same set of spectra for all my residues, i.e. there are missing residues in >> some of the peak lists and relax doesn't like that. So far I bypass the >> problem >> by generating residue-specific peak lists and running the analyses separately >> for individual residues but that's 1) tedious and 2) I'm unable to run >> clustered analysis unless I shave the spectra list to "common denominator". I >> also tried setting the missing intensities to "None" or to "NA" but that's >> not >> working. Any ideas? >> >> ---------------------------------------------------------------------- >> >> Petr Padrta >> >> _______________________________________________ >> relax (http://www.nmr-relax.com) >> >> This is the relax-users mailing list >> relax-users@gna.org >> >> To unsubscribe from this list, get a password >> reminder, or change your subscription options, >> visit the list information page at >> https://mail.gna.org/listinfo/relax-users _______________________________________________ relax (http://www.nmr-relax.com) This is the relax-users mailing list relax-users@gna.org To unsubscribe from this list, get a password reminder, or change your subscription options, visit the list information page at https://mail.gna.org/listinfo/relax-users
