On 21 February 2017 at 07:29, Ashish Sethi <ashish.se...@unimelb.edu.au> wrote:
> Thanks Sam.
>
>
>
> I did ignore the error message and run the model free analysis and I got the
> following errors:
>
>
>
> Traceback (most recent call last):
> File "/usr/local/relax/gui/analyses/execute.py", line 87, in run
> self.run_analysis()
> File "/usr/local/relax/gui/analyses/auto_model_free.py", line 808, in
> run_analysis
> dauvergne_protocol.dAuvergne_protocol(pipe_name=self.data.pipe_name,
> pipe_bundle=self.data.pipe_bundle, results_dir=self.data.save_dir,
> diff_model=self.data.global_models, mf_models=self.data.mf_models,
> local_tm_models=self.data.local_tm_models, grid_inc=self.data.inc,
> diff_tensor_grid_inc=self.data.diff_tensor_grid_inc,
> mc_sim_num=self.data.mc_sim_num, max_iter=self.data.max_iter,
> conv_loop=self.data.conv_loop)
> File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 241, in
> __init__
> self.execute()
> File "/usr/local/relax/auto_analyses/dauvergne_protocol.py", line 604, in
> execute
> self.interpreter.results.read(file='results',
> dir=self.results_dir+'local_tm'+sep+'aic')
> File "/usr/local/relax/prompt/uf_objects.py", line 221, in __call__
> self._backend(*new_args, **uf_kargs)
> File "/usr/local/relax/generic_fns/results.py", line 96, in read
> ds.from_xml(file, dir=dirname(file_path), pipe_to=pipes.cdp_name())
> File "/usr/local/relax/data/__init__.py", line 452, in from_xml
> self[pipe_to].from_xml(pipe_nodes[0], dir=dir, file_version=file_version)
> File "/usr/local/relax/data/pipe_container.py", line 255, in from_xml
> self.structure.from_xml(str_nodes[0], dir=dir, id=parser,
> file_version=file_version)
> File "/usr/local/relax/generic_fns/structure/api_base.py", line 296, in
> from_xml
> self.structural_data.from_xml(model_nodes, id=id,
> file_version=file_version)
> File "/usr/local/relax/generic_fns/structure/api_base.py", line 1223, in
> from_xml
> self[-1].mol.from_xml(mol_nodes, id=id, file_version=file_version)
> File "/usr/local/relax/generic_fns/structure/api_base.py", line 1441, in
> from_xml
> self[-1].from_xml(mol_node, file_version=file_version)
> File "/usr/local/relax/generic_fns/structure/internal.py", line 2607, in
> from_xml
> xml_to_object(mol_node, self, file_version=file_version)
> File "/usr/local/relax/data/relax_xml.py", line 277, in xml_to_object
> value[i] = packBytesAsPyFloat(ieee_value[i])
> File "/usr/local/relax/float.py", line 200, in packBytesAsPyFloat
> doubleString=pack('8B',*bytes)
> error: pack expected 8 items for packing (got 571)
>
>
>
> Can anyone suggest what is the problem ?
Hi Ashish,
Such an error message means that the relax results file is corrupted
somehow. Maybe check that you haven't run out of hard disk space or
that there are no bad sectors on the hard disk. You could also open
up the results_dir+local_tm/aic/results.bz2 file and see if that file
looks ok. If there is nothing wrong with your hard disk, could you
open up a bug report at https://gna.org/bugs/?func=additem&group=relax
and attach the results.bz2 file causing the problem? If you'd like to
keep your data private, try deleting residues from the XML file until
you only have 1 or 2 left, and use the state.load user function to
make sure that that exact "error: pack expected 8 items for packing
(got 571)" message is still present.
Regards,
Edward
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