Is this the make distclean of SAGE or some make distclean for pynormaliz only?
On Thursday, May 23, 2019 at 11:07:54 PM UTC+2, vdelecroix wrote: > > So the PyNormaliz configure script is actually working... you strangely > obtained an error when it was run via the setup.py script with the > mysterious > > configure: error: source directory already configured; run "make > distclean" there first > > Vincent > > Le 23/05/2019 à 23:04, Sébastien Labbé a écrit : > > $ cd > /home/slabbe/GitBox/sage/local/var/tmp/sage/build/pynormaliz-2.5/src > > $ sage -sh > > > > Starting subshell with Sage environment variables set. Don't forget > > to exit when you are done. Beware: > > * Do not do anything with other copies of Sage on your system. > > * Do not use this for installing Sage packages using "sage -i" or for > > running "make" at Sage's root directory. These should be done > > outside the Sage shell. > > > > Bypassing shell configuration files... > > > > Note: SAGE_ROOT=/home/slabbe/GitBox/sage > > > > > > > > $ ./configure > > checking whether the C++ compiler works... yes > > checking for C++ compiler default output file name... a.out > > checking for suffix of executables... > > checking whether we are cross compiling... no > > checking for suffix of object files... o > > checking whether we are using the GNU C++ compiler... yes > > checking whether g++ -std=gnu++11 accepts -g... yes > > checking whether g++ -std=gnu++11 supports C++11 features with > > -std=gnu++11... yes > > configure: creating ./config.status > > config.status: creating config.py > > (sage-sh) slabbe@miami:src$ > > (sage-sh) slabbe@miami:src$ ls > > config.log configure GPLv2 PyNormaliz.py tests > > config.py COPYING m4 Readme.md > > config.py.in doc NormalizModule.cpp setup.cfg > > config.status examples PKG-INFO setup.py > > > > > > > > > > Now, if you want to see the config.log, here it is: > > > > > > > > > > $ cat config.log > > This file contains any messages produced by compilers while > > running configure, to aid debugging if configure makes a mistake. > > > > It was created by PyNormaliz configure VERSION, which was > > generated by GNU Autoconf 2.69. Invocation command line was > > > > $ ./configure > > > > ## --------- ## > > ## Platform. ## > > ## --------- ## > > > > hostname = miami > > uname -m = x86_64 > > uname -r = 4.4.0-143-generic > > uname -s = Linux > > uname -v = #169-Ubuntu SMP Thu Feb 7 07:56:38 UTC 2019 > > > > /usr/bin/uname -p = unknown > > /bin/uname -X = unknown > > > > /bin/arch = unknown > > /usr/bin/arch -k = unknown > > /usr/convex/getsysinfo = unknown > > /usr/bin/hostinfo = unknown > > /bin/machine = unknown > > /usr/bin/oslevel = unknown > > /bin/universe = unknown > > > > PATH: /home/slabbe/GitBox/sage/local/libexec/ccache > > PATH: /home/slabbe/GitBox/sage/build/bin > > PATH: /home/slabbe/GitBox/sage/src/bin > > PATH: /home/slabbe/GitBox/sage/local/bin > > PATH: /home/slabbe/GitBox/sage > > PATH: /home/slabbe/GitBox/scripts > > PATH: /home/slabbe/bin > > PATH: /home/slabbe/Applications/bin > > PATH: /usr/local/sbin > > PATH: /usr/local/bin > > PATH: /usr/sbin > > PATH: /usr/bin > > PATH: /sbin > > PATH: /bin > > PATH: /usr/games > > PATH: /usr/local/games > > PATH: /opt/gurobi811/linux64/bin > > > > > > ## ----------- ## > > ## Core tests. ## > > ## ----------- ## > > > > configure:1939: checking for C++ compiler version > > configure:1948: g++ -std=gnu++11 --version >&5 > > g++ (Ubuntu 5.4.0-6ubuntu1~16.04.11) 5.4.0 20160609 > > Copyright (C) 2015 Free Software Foundation, Inc. > > This is free software; see the source for copying conditions. There is > NO > > warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR > PURPOSE. > > > > configure:1959: $? = 0 > > configure:1948: g++ -std=gnu++11 -v >&5 > > Using built-in specs. > > COLLECT_GCC=/usr/bin/g++ > > COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper > > Target: x86_64-linux-gnu > > Configured with: ../src/configure -v --with-pkgversion='Ubuntu > > 5.4.0-6ubuntu1~16.04.11' > > --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs > > --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ > --prefix=/usr > > --program-suffix=-5 --enable-shared --enable-linker-build-id > > --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix > > --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu > > --enable-libstdcxx-debug --enable-libstdcxx-time=yes > > --with-default-libstdcxx-abi=new --enable-gnu-unique-object > > --disable-vtable-verify --enable-libmpx --enable-plugin > --with-system-zlib > > --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo > > --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre > --enable-java-home > > --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 > > --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 > > --with-arch-directory=amd64 > --with-ecj-jar=/usr/share/java/eclipse-ecj.jar > > --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 > > --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib > > --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu > > --host=x86_64-linux-gnu --target=x86_64-linux-gnu > > Thread model: posix > > gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.11) > > configure:1959: $? = 0 > > configure:1948: g++ -std=gnu++11 -V >&5 > > g++: error: unrecognized command line option '-V' > > g++: fatal error: no input files > > compilation terminated. > > configure:1959: $? = 1 > > configure:1948: g++ -std=gnu++11 -qversion >&5 > > g++: error: unrecognized command line option '-qversion' > > g++: fatal error: no input files > > compilation terminated. > > configure:1959: $? = 1 > > configure:1979: checking whether the C++ compiler works > > configure:2001: g++ -std=gnu++11 -L/home/slabbe/GitBox/sage/local/lib > > -Wl,-rpath,/home/slabbe/GitBox/sage/local/lib conftest.cpp >&5 > > configure:2005: $? = 0 > > configure:2053: result: yes > > configure:2056: checking for C++ compiler default output file name > > configure:2058: result: a.out > > configure:2064: checking for suffix of executables > > configure:2071: g++ -std=gnu++11 -o conftest > > -L/home/slabbe/GitBox/sage/local/lib > > -Wl,-rpath,/home/slabbe/GitBox/sage/local/lib conftest.cpp >&5 > > configure:2075: $? = 0 > > configure:2097: result: > > configure:2119: checking whether we are cross compiling > > configure:2127: g++ -std=gnu++11 -o conftest > > -L/home/slabbe/GitBox/sage/local/lib > > -Wl,-rpath,/home/slabbe/GitBox/sage/local/lib conftest.cpp >&5 > > configure:2131: $? = 0 > > configure:2138: ./conftest > > configure:2142: $? = 0 > > configure:2157: result: no > > configure:2162: checking for suffix of object files > > configure:2184: g++ -std=gnu++11 -c conftest.cpp >&5 > > configure:2188: $? = 0 > > configure:2209: result: o > > configure:2213: checking whether we are using the GNU C++ compiler > > configure:2232: g++ -std=gnu++11 -c conftest.cpp >&5 > > configure:2232: $? = 0 > > configure:2241: result: yes > > configure:2250: checking whether g++ -std=gnu++11 accepts -g > > configure:2270: g++ -std=gnu++11 -c -g conftest.cpp >&5 > > configure:2270: $? = 0 > > configure:2311: result: yes > > configure:2423: checking whether g++ -std=gnu++11 supports C++11 > features > > with -std=gnu++11 > > configure:2719: g++ -std=gnu++11 -std=gnu++11 -c -g -O2 conftest.cpp > >&5 > > configure:2719: $? = 0 > > configure:2728: result: yes > > configure:3107: g++ -std=gnu++11 -std=gnu++11 -o conftest -g -O2 > > -L/home/slabbe/GitBox/sage/local/lib > > -Wl,-rpath,/home/slabbe/GitBox/sage/local/lib conftest.cpp >&5 > > configure:3107: $? = 0 > > configure:3141: g++ -std=gnu++11 -std=gnu++11 -o conftest -g -O2 > > -L/home/slabbe/GitBox/sage/local/lib > > -Wl,-rpath,/home/slabbe/GitBox/sage/local/lib conftest.cpp >&5 > > configure:3141: $? = 0 > > configure:3141: ./conftest > > configure:3141: $? = 0 > > configure:3307: creating ./config.status > > > > ## ---------------------- ## > > ## Running config.status. ## > > ## ---------------------- ## > > > > This file was extended by PyNormaliz config.status VERSION, which was > > generated by GNU Autoconf 2.69. Invocation command line was > > > > CONFIG_FILES = > > CONFIG_HEADERS = > > CONFIG_LINKS = > > CONFIG_COMMANDS = > > $ ./config.status > > > > on miami > > > > config.status:721: creating config.py > > > > ## ---------------- ## > > ## Cache variables. ## > > ## ---------------- ## > > > > ac_cv_cxx_compiler_gnu=yes > > ac_cv_env_CCC_set= > > ac_cv_env_CCC_value= > > ac_cv_env_CPPFLAGS_set= > > ac_cv_env_CPPFLAGS_value= > > ac_cv_env_CXXFLAGS_set= > > ac_cv_env_CXXFLAGS_value= > > ac_cv_env_CXX_set=set > > ac_cv_env_CXX_value='g++ -std=gnu++11' > > ac_cv_env_LDFLAGS_set=set > > ac_cv_env_LDFLAGS_value='-L/home/slabbe/GitBox/sage/local/lib > > -Wl,-rpath,/home/slabbe/GitBox/sage/local/lib ' > > ac_cv_env_LIBS_set= > > ac_cv_env_LIBS_value= > > ac_cv_env_build_alias_set= > > ac_cv_env_build_alias_value= > > ac_cv_env_host_alias_set= > > ac_cv_env_host_alias_value= > > ac_cv_env_target_alias_set= > > ac_cv_env_target_alias_value= > > ac_cv_objext=o > > ac_cv_prog_cxx_g=yes > > ax_cv_cxx_compile_cxx11__std_gnupp11=yes > > > > ## ----------------- ## > > ## Output variables. ## > > ## ----------------- ## > > > > CPPFLAGS='' > > CXX='g++ -std=gnu++11 -std=gnu++11' > > CXXFLAGS='-g -O2' > > DEFS='-DPACKAGE_NAME=\"PyNormaliz\" -DPACKAGE_TARNAME=\"pynormaliz\" > > -DPACKAGE_VERSION=\"VERSION\" -DPACKAGE_STRING=\"PyNormaliz\ VERSION\" > > -DPACKAGE_BUGREPORT=\"https://github.com/Normaliz/PyNormaliz\"; > > -DPACKAGE_URL=\"\" -DHAVE_CXX11=1' > > ECHO_C='' > > ECHO_N='-n' > > ECHO_T='' > > ENFNORMALIZ='True' > > EXEEXT='' > > HAVE_CXX11='1' > > LDFLAGS='-L/home/slabbe/GitBox/sage/local/lib > > -Wl,-rpath,/home/slabbe/GitBox/sage/local/lib ' > > LIBOBJS='' > > LIBS='' > > LTLIBOBJS='' > > OBJEXT='o' > > PACKAGE_BUGREPORT='https://github.com/Normaliz/PyNormaliz' > > PACKAGE_NAME='PyNormaliz' > > PACKAGE_STRING='PyNormaliz VERSION' > > PACKAGE_TARNAME='pynormaliz' > > PACKAGE_URL='' > > PACKAGE_VERSION='VERSION' > > PATH_SEPARATOR=':' > > SHELL='/bin/bash' > > ac_ct_CXX='' > > bindir='${exec_prefix}/bin' > > build_alias='' > > datadir='${datarootdir}' > > datarootdir='${prefix}/share' > > docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' > > dvidir='${docdir}' > > exec_prefix='${prefix}' > > host_alias='' > > htmldir='${docdir}' > > includedir='${prefix}/include' > > infodir='${datarootdir}/info' > > libdir='${exec_prefix}/lib' > > libexecdir='${exec_prefix}/libexec' > > localedir='${datarootdir}/locale' > > localstatedir='${prefix}/var' > > mandir='${datarootdir}/man' > > oldincludedir='/usr/include' > > pdfdir='${docdir}' > > prefix='/usr/local' > > program_transform_name='s,x,x,' > > psdir='${docdir}' > > sbindir='${exec_prefix}/sbin' > > sharedstatedir='${prefix}/com' > > sysconfdir='${prefix}/etc' > > target_alias='' > > > > ## ----------- ## > > ## confdefs.h. ## > > ## ----------- ## > > > > /* confdefs.h */ > > #define PACKAGE_NAME "PyNormaliz" > > #define PACKAGE_TARNAME "pynormaliz" > > #define PACKAGE_VERSION "VERSION" > > #define PACKAGE_STRING "PyNormaliz VERSION" > > #define PACKAGE_BUGREPORT "https://github.com/Normaliz/PyNormaliz"; > > #define PACKAGE_URL "" > > #define HAVE_CXX11 1 > > > > configure: exit 0 > > > -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To post to this group, send email to sage-devel@googlegroups.com. Visit this group at https://groups.google.com/group/sage-devel. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/ed18cf8d-2952-448b-833a-d9479fa6f980%40googlegroups.com. For more options, visit https://groups.google.com/d/optout.
