Hi, The build finished successfully after deleting ~/.local/share/jupyter/kernels/sagemath/kernel.json.
Thanks, Kazuyoshi 2022年4月6日(水) 6:05 Dima Pasechnik <dimp...@gmail.com>: > More precisely, a very similarly looking error was mentioned in > https://trac.sagemath.org/ticket/33507#comment:75 > - and it turns out that there was a stale Sagemath Jupyter kernel, i.e. a > file named kernel.json, in a directory > with name ending on sagemath, i.e. something like > foo/bar/sagemath/kernel.json. > > In that particular case it was (on macOS) > ~/Library/Jupyter/sagemath/kernel.json with the obsolete path > to sage (version 9.4.beta3) > > In your case it would be pointing to sage 9.0. > > > > > On Tuesday, April 5, 2022 at 10:59:50 AM UTC+1 Dima Pasechnik wrote: > >> Errors such as >> sagemath_doc_html-none] [repl ] Notebook execution failed >> (exception: [Errno 2] No such file or directory: >> '/home/furutaka/work/sage/sage-9.0-git-bld/local/bin/sage') >> >> indicate that you have remains of Sage 9.0 (still instaleld in >> /home/furutaka/work/sage/sage-9.0-git-bld ?) pollutng the build. >> Perhaps it's in your PATH. >> >> On Tue, Apr 5, 2022 at 10:34 AM Kazuyoshi Furutaka >> <furutaka....@gmail.com> wrote: >> > >> > The build failed on Fedora-35/python-3.10.4. >> > >> > Logs attached; excerpts below... >> > >> > Kazuyoshi >> > ... >> > [sagemath_doc_html-none] Build finished. The built documents can be >> found in >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/local/share/doc/sage/inventory/en/reference/coercion >> >> > [sagemath_doc_html-none] [repl ] executing interact >> > [sagemath_doc_html-none] [repl ] >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/local/var/lib/sage/venv-python3.10/lib64/python3.10/site-packages/jsonschema/validators.py:188: >> DeprecationWarning: Passing a schema to Validator.iter_errors is deprecated >> and will be removed in a future release. Call >> validator.evolve(schema=new_schema).iter_errors(...) instead. >> > [sagemath_doc_html-none] [repl ] warnings.warn( >> > [sagemath_doc_html-none] [repl ] >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/local/var/lib/sage/venv-python3.10/lib64/python3.10/site-packages/nbclient/util.py:47: >> DeprecationWarning: There is no current event loop >> > [sagemath_doc_html-none] [repl ] loop = asyncio.get_event_loop() >> > [sagemath_doc_html-none] [repl ] Extension error: >> > [sagemath_doc_html-none] [repl ] Notebook execution failed (exception: >> [Errno 2] No such file or directory: >> '/home/furutaka/work/sage/sage-9.0-git-bld/local/bin/sage') >> > [sagemath_doc_html-none] Build finished. The built documents can be >> found in >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/local/share/doc/sage/inventory/en/reference/repl >> >> > ... >> > [sagemath_doc_html-none] Build finished. The built documents can be >> found in >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/local/share/doc/sage/inventory/en/reference/combinat >> >> > [sagemath_doc_html-none] [plot3d ] executing plot3d >> > [sagemath_doc_html-none] [plot3d ] >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/local/var/lib/sage/venv-python3.10/lib64/python3.10/site-packages/jsonschema/validators.py:188: >> DeprecationWarning: Passing a schema to Validator.iter_errors is deprecated >> and will be removed in a future release. Call >> validator.evolve(schema=new_schema).iter_errors(...) instead. >> > [sagemath_doc_html-none] [plot3d ] warnings.warn( >> > [sagemath_doc_html-none] [plot3d ] >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/local/var/lib/sage/venv-python3.10/lib64/python3.10/site-packages/nbclient/util.py:47: >> DeprecationWarning: There is no current event loop >> > [sagemath_doc_html-none] [plot3d ] loop = asyncio.get_event_loop() >> > [sagemath_doc_html-none] [plot3d ] Extension error: >> > [sagemath_doc_html-none] [plot3d ] Notebook execution failed >> (exception: [Errno 2] No such file or directory: >> '/home/furutaka/work/sage/sage-9.0-git-bld/local/bin/sage') >> > [sagemath_doc_html-none] Build finished. The built documents can be >> found in >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/local/share/doc/sage/inventory/en/reference/plot3d >> >> > [sagemath_doc_html-none] >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/local/var/lib/sage/venv-python3.10/lib64/python3.10/site-packages/nbclient/util.py:47: >> DeprecationWarning: There is no current event loop >> > [sagemath_doc_html-none] loop = asyncio.get_event_loop() >> > ... >> > [sagemath_doc_html-none] [reference] >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/src/doc/en/reference/index.rst:17: >> WARNING: unknown document: repl/index >> > [sagemath_doc_html-none] [reference] >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/src/doc/en/reference/index.rst:24: >> WARNING: unknown document: plot3d/index >> > [sagemath_doc_html-none] [reference] The inventory files are in >> local/share/doc/sage/inventory/en/reference. >> > [sagemath_doc_html-none] Error building the documentation. >> > [sagemath_doc_html-none] Traceback (most recent call last): >> > [sagemath_doc_html-none] File "/usr/lib64/python3.10/runpy.py", line >> 196, in _run_module_as_main >> > [sagemath_doc_html-none] return _run_code(code, main_globals, None, >> > [sagemath_doc_html-none] File "/usr/lib64/python3.10/runpy.py", line >> 86, in _run_code >> > [sagemath_doc_html-none] exec(code, run_globals) >> > [sagemath_doc_html-none] File >> "/home/furutaka/work/sage/sage-9.6.beta7-gcc/local/var/lib/sage/venv-python3.10/lib64/python3.10/site-packages/sage_docbuild/__main__.py", >> line 2, in <module> >> > [sagemath_doc_html-none] main() >> > [sagemath_doc_html-none] File >> "/home/furutaka/work/sage/sage-9.6.beta7-gcc/local/var/lib/sage/venv-python3.10/lib64/python3.10/site-packages/sage_docbuild/__init__.py", >> line 1762, in main >> > [sagemath_doc_html-none] builder() >> > [sagemath_doc_html-none] File >> "/home/furutaka/work/sage/sage-9.6.beta7-gcc/local/var/lib/sage/venv-python3.10/lib64/python3.10/site-packages/sage_docbuild/__init__.py", >> line 145, in f >> > [sagemath_doc_html-none] runsphinx() >> > [sagemath_doc_html-none] File >> "/home/furutaka/work/sage/sage-9.6.beta7-gcc/local/var/lib/sage/venv-python3.10/lib64/python3.10/site-packages/sage_docbuild/sphinxbuild.py", >> line 326, in runsphinx >> > [sagemath_doc_html-none] sys.stderr.raise_errors() >> > [sagemath_doc_html-none] File >> "/home/furutaka/work/sage/sage-9.6.beta7-gcc/local/var/lib/sage/venv-python3.10/lib64/python3.10/site-packages/sage_docbuild/sphinxbuild.py", >> line 262, in raise_errors >> > [sagemath_doc_html-none] raise OSError(self._error) >> > [sagemath_doc_html-none] OSError: >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/src/doc/en/reference/index.rst:17: >> WARNING: unknown document: repl/index >> > [sagemath_doc_html-none] >> > [sagemath_doc_html-none] Note: incremental documentation builds >> sometimes cause spurious >> > [sagemath_doc_html-none] error messages. To be certain that these are >> real errors, run >> > [sagemath_doc_html-none] "make doc-clean doc-uninstall" first and try >> again. >> > [sagemath_doc_html-none] make[6]: *** [Makefile:20: >> doc-inventory--reference_top] Error 1 >> > [sagemath_doc_html-none] make[5]: *** [Makefile:38: >> doc-inventory-reference] Error 2 >> > make[4]: *** [Makefile:2910: sagemath_doc_html-SAGE_DOCS-no-deps] Error >> 2 >> > make[3]: *** [Makefile:2910: >> /home/furutaka/work/sage/sage-9.6.beta7-gcc/local/var/lib/sage/installed/sagemath_doc_html-none] >> Error 2 >> > make[2]: *** [Makefile:2471: all-start] Error 2 >> > make[2]: Leaving directory >> '/home/furutaka/work/sage/sage-9.6.beta7-gcc/build/make' >> > >> > real 21m52.324s >> > user 152m48.760s >> > sys 8m20.897s >> > *************************************************************** >> > Error building Sage. >> > >> > The following package(s) may have failed to build (not necessarily >> > during this run of 'make all-start'): >> > >> > It is safe to delete any log files and build directories, but they >> > contain information that is helpful for debugging build problems. >> > WARNING: If you now run 'make' again, the build directory of the >> > same version of the package will, by default, be deleted. Set the >> > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >> > >> > make[1]: *** [Makefile:39: all-start] Error 1 >> > make[1]: Leaving directory >> '/home/furutaka/work/sage/sage-9.6.beta7-gcc' >> > make: *** [Makefile:13: all] Error 2 >> > >> > >> > >> > 2022年4月3日(日) 4:12 Volker Braun <vbrau...@gmail.com>: >> >> >> >> As always, you can get the latest beta version from the "develop" git >> branch. Alternatively, the self-contained source tarball is at >> http://www.sagemath.org/download-latest.html >> >> >> >> 78bfb6c7ad (tag: 9.6.beta7, trac/develop) Updated SageMath version to >> 9.6.beta7 >> >> 199ee74bdd Trac #33563: fix some tests of emptiness >> >> 596c5ebe69 Trac #33552: adjust error messages in toric/ >> >> 36ffa34de1 Trac #33551: various details in pyx files >> >> b9c0c5cb3e Trac #33545: fix W391 in rings >> >> 160a503a46 Trac #33539: sage.manifolds, sage.tensor: Fix spelling >> errors >> >> 26c9c81022 Trac #33519: fix indentation in integration.pyx >> >> 6312320fb8 Trac #33517: fix W391 in categories >> >> eb33795b51 Trac #33516: fix W391 in schemes >> >> 2258189a8d Trac #33510: clean build/sage_bootstrap >> >> 23ac99956a Trac #33506: spaces around some % in combinat/ >> >> 5b4fe73af3 Trac #33503: adjust a few more error messages >> >> aba82b3e94 Trac #33422: Bug in equivalence_decomposition of inductive >> valuation >> >> f516aabdee Trac #33400: Add pictures to various 3d graphics manual >> pages >> >> f4a39b12e3 Trac #29775: Add a bit of typing to manifold code >> >> a45aa86091 Trac #33604: Remove random_DAG from global namespace >> >> c55624e4dc Trac #33603: Fix Conic doctests >> >> 76167599cc Trac #33602: Deprecate the import of some element classes >> in sage/ring/all.py >> >> 9b8d0ef4f1 Trac #33595: fix indentation (E111) in some pyx files, >> mostly in rings/ >> >> aa11173798 Trac #33594: fix W391 in manifolds, geometry and graphs >> >> 4a8c685227 Trac #33583: Move integration and volume to >> Polyhedron_base7 >> >> 8f750d97b3 Trac #33581: small cleanup for mathics.py >> >> a79b1b8baa Trac #33573: extend method cores to accept graphs with >> multiple edges >> >> 9543d076d5 Trac #33570: Add CONTRIBUTING.md to the repository >> >> 86d9846846 Trac #33569: Speed up methods allow_multiple_edges and >> multiple_edges >> >> 08a942330a Trac #33507: sagemath_doc_html: Use jupyter-sphinx for 3D >> graphics >> >> 3dd4e6b470 Trac #33568: Add method `is_integral_domain` for polynomial >> quotient rings >> >> 76d0d33770 Trac #33567: finer category for cubic braid group quotients >> >> 328de7a17c Trac #33564: add one test in TestSuite of Coxeter groups >> >> 08854a8167 Trac #33559: Fix bug in >> sage.graphs.graph_coloring.vertex_coloring >> >> 1762a6ca6d Trac #33558: get rid of __nonzero__ and use __bool__ >> instead >> >> fbc8bd05e9 Trac #33555: refresh the file subword.py >> >> 42a088a131 Trac #33553: README Build from Source: m4 (step 5) is >> needed to run `make configure` (step 3) >> >> ce74d3217f Trac #33540: remove class inheritance of object in combinat >> >> d8f2ce96a0 Trac #33538: More doctests fix in sage_docbuild >> >> a5446dbaa4 Trac #33536: Some changes suggested by lgtm >> >> b9cdb7c713 Trac #33529: Remove old thebe package >> >> 211da0e7d1 Trac #33214: Vélu isogeny formulas use incorrect >> a-invariants when pre-isomorphism is set >> >> 64bd36ebc8 Trac #32687: error in height difference bound >> >> f6ce4103f3 Trac #8784: remove quit_sage() command from all.py top >> level >> >> 3c6f5086b7 Trac #33585: doctest failure when doc html not >> built/installed but sphinx is available in PYTHONPATH >> >> afa0d9633b Trac #33584: Adapt Mathics interface to SymPy upgrade from >> 1.8 to 1.10 (resp.1.9) >> >> 58bf1ba6bb Trac #33520: scipy, networkx: Update install-requires.txt >> >> d20cc4945d Trac #33139: Fix sagemath_doc_html build failure on Cygwin >> >> e39a3a2736 Trac #31924: sage -t: Do not run pytest on individual >> Python files unless they match the pytest file pattern >> >> a275e1f383 Trac #33607: jupyterlab: Use jupyterlab-server < 2.11 >> >> 949bb36dd0 Trac #33523: Fix crosslinks in algebras catalog >> >> e3fce642a0 Trac #33469: %matplotlib widget does not work in the scope >> of %display latex >> >> baf6b19517 Trac #33443: slow doctest improvements >> (isogeny_small_degree, function_field, doctest/test.py) >> >> b11471b30b Trac #33393: Implement Krawtchouk, Meixner, and Hahn >> polynomials >> >> a54d7ce44a Trac #33114: Feature.require vs. is_present, is_functional >> >> c399fc096b Trac #32364: every quaternion lies in every quaternion >> order >> >> 5166ac1413 Trac #20343: Add file `sage/misc/latex_standalone.py` and >> class `TikzPicture` >> >> 0991f82d57 Trac #33547: Update sympy to 1.10.1 >> >> 0d0bb77fb2 Trac #33508: OpenSSL 3.0.2 security update >> >> 56d233b1f6 Trac #33227: SystemError: calling remove_from_pari_stack() >> inside sig_on() in expression.pyx >> >> 43474c96d5 (tag: 9.6.beta6) Updated SageMath version to 9.6.beta6 >> >> >> >> -- >> >> You received this message because you are subscribed to the Google >> Groups "sage-release" group. >> >> To unsubscribe from this group and stop receiving emails from it, send >> an email to sage-release...@googlegroups.com. >> >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-release/5afaf70b-caa4-439f-8759-9dcb995b8c8cn%40googlegroups.com. >> >> > >> > >> > >> > -- >> > Kazuyoshi Furutaka >> 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